| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2827 |
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| Symbol | |
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| ID | 5613888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3416120 |
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| End bp | 3418423 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933746 |
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| Product | DNA internalization-related competence protein ComEC/Rec2 |
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| Protein accession | YP_001474562 |
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| Protein GI | 157375962 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
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| TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein
[TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0829289 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAT TTATGTTTGG CTTCAGTGCC ATAATTCTCA GTGCGATGCT ATGGCCGTCA
CTGCCACCTC TACTCTTGCT TCCCGCATTT GTGTTGAGCG GAACTATCTT GCTTAGGCGT
CTGCCTATTA TTGCAGGAGC GTTGCTGGCT GTCGCTTGGA TATCAATCTA TGCCCAGCAA
TTACTGACAT GGGAACCGCT AAATACAGAG CAGAATCTCG TCGTGAGGGG CGAAATCATA
TCACTAGTTA GTCAAAACAG CGACTGGCTT AGTATGGATA TTCGGTTGTT GAGATCAAGT
TCGAGTGAAT TATTGTCAAA AAACTTACGA ATAAGTTGGA AGAAAGCACC CAAAATACAA
CTCGGAGAGA TCTGGGAGTT TGAGATTAAA GCCAAGCCTA TTACCAGTGT ACTGAACCAA
GGGGGATATA ATCAGCAAAA AGCGCTTCTT AGTCGCCATA TAGTGGGGAA GGGGAGTGTG
CAAGGCGGGA GACGGTTGAG TGTCAGTCAC TCGGTCAGAG CTAAAATCAT CACAGAGCTT
ATGCCGCATC TTAGATTATT AGAGAGTGGC GATCTGATTT TAGCCCTATT ACTCGGTGAT
AAGAGTCTTA TCGCGAGTGA CCGCTGGCAT TCTCTGAGGG TTACGGGCTC CGGTCATTTA
GTTGCTATCT CGGGCCTGCA CCTTTCCGTT GTTGCCGCAT GGGCTTTTAT GGGGACATTT
TCCCTGCTCA GTTATTGCTC GCCTCAGTTC GGTCGGCGTA ACTTACTGCT TGCGGCTATG
TTATCTGCAA TCATTTGTAC TATGTATGCC TACCTTGCCG GTTTTGCCTT GCCAACCCAG
CGAGCGCTGG TGATGCTGCT GTTGTTACTG ATACTAAGCA CGATAAAACG ATTTTCCTCG
CCCTGGGAGC GGCTGTTAGC AGCGATGTTT CTGCTGTTAC TCTTCGACCC TTTCTGCTGT
TTGAGTGCCG GTTTTTGGCT CTCATTTTTA GCCTTATCGA TTATTTTACT CACGATAAGT
CGCACACAAG TATCAATTTC AAATATTAAT ACCGAGCACT CAAGGTGGCA GGGCTTTAGG
CAAAAATTCA CTCTTTTCTG GTCAATTCAA TGGCGACTAA GCTTAGGTTT AGGGCTGTTA
CAAGCCCTGT TCTTTGGGGG CATGTCGCCT TATGGTTTAT TGTTTAATTT TCTGTTTGTT
CCCTGGTTCA GCATAGTGGT GATCCCTCTA TCTATCCTGA GCCTTGTTAT GTGGGGCGCA
GCTATGGCTA TAGGATTTGA GCTAAGTGGT ATCTTCGCTA TTGTCGATAT CAGCCTGGCT
CCAATGCTTT ATGCTTTCAC CATCTTCAAG CAGTTACCGT CGGCCTGGTT TCCTATCTCT
GACAAGATGA TTATGGCGTT TGCATTGGGC CTTATGGGCT TGTGGCTAAT CACACATTCG
ATAAAAGTAA AGTGGAAGCT CGTCTCTTCA GTTTTTCTCT TGCCCGCGTT GTTAACCCTA
TGGAGTCGAC TCGTACCTAT GACTCATCAT GAATGGCGAG TTCATCTGCT CGATGTCGGT
CAGGGGCTCT GTGTTGTGAT AGAAAAAACG GGTCGGGCAT GGGTATACGA TACCGGGGCG
GCCTATGGTG ACAATTTTAG CTATGCTGAA CGGGTCATTC TTCCCTTCCT CTATTCCAGA
GGGATAAGCG ATGTAGATTA TCTTGTGCTT AGCCACGGTG ATAATGACCA TGCCGGTGGT
GCCAATAAAC TCATTGAAGC ATATCCAAGT GTCAAAGTGA TCACCGATCT TGTTGAGTTT
TCGGATATAA ATTGTCGTCC AAAAGGGTTC AGCTGGTATG GACTAGAGAT TAAAGTTTTA
GGTCCGAAAC AGGCCCAGGG AGGCAACGAT GGTTCATGTG TATTGAGTGT GAGCGATGGC
TATCACCGGT TGCTTCTGCC CGGAGATATT GAGGTGCGAG GCGAGTGGGC GATGCTAAAT
GAAGGTTTGT CATTACAAAG TGAAGTGCTT ATCGCACCTC ACCATGGAAG CAGAACCTCC
TCTACTCAAG CATTTATCAA GAGTGTCTCT CCTGAGCTGG TATTATTCCC ATCAGGGTTT
AATAATCGCT ATGGTTTTCC CAAGCAGGAT GTCGTTAATC GATATAAACT GAGTGGAAGT
GAGATGCTGA TCTCGGGAAG AGAGGGACAA ATCAGTGTGC TTTTTAACCA CGAACCGCGG
CAAATTAAAT CATATCGAAC AGATCTTGCG CCATTTTGGT ACAACGGATT GTTTAGGTTT
GGCGAGTTGG CCGATCCAGA GTAG
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| Protein sequence | MNRFMFGFSA IILSAMLWPS LPPLLLLPAF VLSGTILLRR LPIIAGALLA VAWISIYAQQ
LLTWEPLNTE QNLVVRGEII SLVSQNSDWL SMDIRLLRSS SSELLSKNLR ISWKKAPKIQ
LGEIWEFEIK AKPITSVLNQ GGYNQQKALL SRHIVGKGSV QGGRRLSVSH SVRAKIITEL
MPHLRLLESG DLILALLLGD KSLIASDRWH SLRVTGSGHL VAISGLHLSV VAAWAFMGTF
SLLSYCSPQF GRRNLLLAAM LSAIICTMYA YLAGFALPTQ RALVMLLLLL ILSTIKRFSS
PWERLLAAMF LLLLFDPFCC LSAGFWLSFL ALSIILLTIS RTQVSISNIN TEHSRWQGFR
QKFTLFWSIQ WRLSLGLGLL QALFFGGMSP YGLLFNFLFV PWFSIVVIPL SILSLVMWGA
AMAIGFELSG IFAIVDISLA PMLYAFTIFK QLPSAWFPIS DKMIMAFALG LMGLWLITHS
IKVKWKLVSS VFLLPALLTL WSRLVPMTHH EWRVHLLDVG QGLCVVIEKT GRAWVYDTGA
AYGDNFSYAE RVILPFLYSR GISDVDYLVL SHGDNDHAGG ANKLIEAYPS VKVITDLVEF
SDINCRPKGF SWYGLEIKVL GPKQAQGGND GSCVLSVSDG YHRLLLPGDI EVRGEWAMLN
EGLSLQSEVL IAPHHGSRTS STQAFIKSVS PELVLFPSGF NNRYGFPKQD VVNRYKLSGS
EMLISGREGQ ISVLFNHEPR QIKSYRTDLA PFWYNGLFRF GELADPE
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