| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2826 |
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| Symbol | |
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| ID | 5613887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3414273 |
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| End bp | 3416087 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933745 |
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| Product | ABC transporter, ATP-binding protein MsbA |
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| Protein accession | YP_001474561 |
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| Protein GI | 157375961 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.070781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGAAT CAACTAAAAG TGAAGTTTGG ACCGTTTTTA GACGGCTACT CGGTTACCTT
AAGCCATTAA AGGCTGTTTT TGTTTTTGCC GTGCTTGGAC TGGCAACATA CGCACTTGTT
GATGCGACAT TCATTGCGGT CATAAAACCT TTTATCGATG AGGGCTTCGG TGGCCAGGCG
GGTCAAGCAA CTTCAAACAT CAATACTTTA GATCTAGGTA CGAGTGGCGG CTTTAATGCC
GACAATGAAG TTCTCTTTTA TGCCCCTTTT GTCGTGATAG GGCTCTTTAC TCTGCGCGGT
TTAGCTAACT TTGTCTCGAC CTACAGTATC TCGTATATGA GTGCCAGACT CATTATGGAC
ATGCGTCAGC AGGTATTCGA ACATTATCTT ACGTTACCGG TAAGCTATAT GGACAGTGAG
AATACAGGTA ACCTCATCTC AAGAGTGACC TACGATACAG AGCAGATAGC CCGCGCGACA
GGCAGTGCGA TGATCACCAT TATTCGTGAC AGTATCACAG TGATTGGAAT GTTGGGGATC
ATGTTTTATT ACTCCTGGAA ACTCTCGCTT TGTATCTTAG TCATTGGACC GATAATCGGT
TATGTGATCG CTACGGTCAG CAAACGCTTC AGAAAAGTGT CTAAGAATAT TCAGGCGGCA
ATGGGAAATG TCACCGCCGC CACAGAACAG ATGCTCAAAG GGCATAAAAA TGTGCTTTCA
TTCGGTGGGC AAGAAACCGA AGCTGCGCGT TTTTTGAAGG TCAACGATCA AAATCGTTAT
CAGACAATGA AGTTAGCGAT GGCACAATCT GTAAGCCAGC CATTGGTGAT GATCATTGGG
TCATTTGCTT TAGCATTTGT CCTGTACGCA GCCAGCATAG ATAGCCTCAA AGCTGAGCTA
ACCGCCGGAA CATTCGCGAC CATTCTCGGC GCCATGTTAG CCATGCTTCA ACCGATTAAA
AACTTAACGC GAGTCAATGC CGAATTCCAG CGCGGTATTG CGGCATGTAC GACGGTTTTT
GAGTTATTGG ATACCTCTCC TGAGGTCGAT AACGGGACCT ACCAAGTTGA GAGAGTCCAA
GGCGATCTCA GCTTTAATCA GGTTAACTTC AGCTATCCGG GGCAAGAAAA GGCTGCGTTG
AAGGATATTA ACTTTACCGT CGAACAGGGC AAAACTATTG CTCTGGTTGG GCGCTCCGGT
TCCGGTAAAT CGACCATCGC AAACTTAGTC ACCCGTTTTT ACACCGGGCT GAGTGAAGGC
AAGATCACAT TGGATGGCGT TAATATCGAT GATTACACGC TCACCTGTTT GCGGGACCAG
GTGGCATTGG TATCCCAGCA GGTGACGCTG TTTAACGACT CCATTGCGAA TAACATTGCC
TACGCTTATT CCGGCGAAGC GACGAAAGAG CAGATCATTG AGGCGGCGAC ATTAGCGCAT
GCGATGGAGT TTATCGAACA GTTGCCTGAA GGATTAGATA CCCAAATTGG TGAAGACGGT
GTGATGCTGT CCGGGGGACA GAGGCAACGT ATCGCTATCG CGAGAGCCAT CTTACGTAAT
TCACCGGTAC TCATTTTAGA TGAGGCAACA TCGGCCCTCG ATACCGAATC TGAGAAAGCG
ATTCAATTGG GACTGGATAA TTTAAGACAT AATCGCACCT CGATTGTGAT TGCTCATCGC
CTCTCTACCA TTGAAAGTGC CGATCAAATC CTGGTTGTGG ATCAGGGGCA GATTATTGAG
CGTGGAGACC ACCAATCACT GCTCGAGCAA GACGGCATGT ACGCTAAGCT TTATCAGATG
CAGTTCGGCA GCTAA
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| Protein sequence | MTESTKSEVW TVFRRLLGYL KPLKAVFVFA VLGLATYALV DATFIAVIKP FIDEGFGGQA
GQATSNINTL DLGTSGGFNA DNEVLFYAPF VVIGLFTLRG LANFVSTYSI SYMSARLIMD
MRQQVFEHYL TLPVSYMDSE NTGNLISRVT YDTEQIARAT GSAMITIIRD SITVIGMLGI
MFYYSWKLSL CILVIGPIIG YVIATVSKRF RKVSKNIQAA MGNVTAATEQ MLKGHKNVLS
FGGQETEAAR FLKVNDQNRY QTMKLAMAQS VSQPLVMIIG SFALAFVLYA ASIDSLKAEL
TAGTFATILG AMLAMLQPIK NLTRVNAEFQ RGIAACTTVF ELLDTSPEVD NGTYQVERVQ
GDLSFNQVNF SYPGQEKAAL KDINFTVEQG KTIALVGRSG SGKSTIANLV TRFYTGLSEG
KITLDGVNID DYTLTCLRDQ VALVSQQVTL FNDSIANNIA YAYSGEATKE QIIEAATLAH
AMEFIEQLPE GLDTQIGEDG VMLSGGQRQR IAIARAILRN SPVLILDEAT SALDTESEKA
IQLGLDNLRH NRTSIVIAHR LSTIESADQI LVVDQGQIIE RGDHQSLLEQ DGMYAKLYQM
QFGS
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