| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2819 |
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| Symbol | gltA |
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| ID | 5613962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3402633 |
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| End bp | 3403919 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933738 |
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| Product | type II citrate synthase |
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| Protein accession | YP_001474554 |
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| Protein GI | 157375954 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0372] Citrate synthase |
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| TIGRFAM ID | [TIGR01798] citrate synthase I (hexameric type) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0484944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.528181 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGATA ATATAGCCAA ATTGGAACTA CCAGGGAATG AATCAATCGA TCTGCCAGTC
AAAAAGGGCA CGGCGGGATT TGATGTTATT GACATCAGTA AGCTAGGTAG TAAAGGTCAC
TTTACCTTTG ATCCAGGATT TCTCGCAACA GCTTCCTGTG AATCAGCAAT TACCTACATC
GATGGCGACC AGGGGATACT GCTTCATCGC GGTTACCCTA TCGGTGAACT AGCCGTTGAT
TCAGATTATT TAGATCTGTG TTATTTGCTT CTCTACGGAG AGTTACCATC TAAAACTCAG
TATGAAAAGT TTTGTCATAC TGTAAAAAAC CATACTATGG TGAACGAACA GCTTGCAGCC
TTCTTCCGAG GCTTCAGACG TGATGCTCAC CCCATGGCAA TGCTTTGTGG TGTCACCGGA
GCGTTATCTG CATTTTATCA AGACTCTTTG GATGTCAACG ATGAGCGTCA CCGCGAAATC
GCTGCATTCC GTCTTGTCTC AAAAATGCCG ACAATCGCAG CCATGTGCTA CAAGTACTCA
ATCGGCCAAC CATTCGTTTA TCCACGTAAT GATTTGAGCT ACGCAGGTAA TTTCCTCAGC
ATGATGTTTG CTGTACCTTG CGAAGAGTAC AAAGTTAATC CAATCGTCGA ACGCGCTATG
GATCGCATCT TTATTCTGCA TGCCGATCAC GAGCAAAATG CATCGACCTC TACCGTTCGT
CTGGCCGGTT CTTCAGGTGC CAACCCATTT GCATGTATTG CAGCGGGTAT CGCATCACTA
TGGGGACCCG CTCACGGCGG CGCAAACGAA GCATGTCTGA AGATGTTGGA AGAGATCGGC
AGTGTTGACC GTATTCCTGA GTTTATTGCA CGAGCCAAGG ATAAAGAAGA TCCTTTCCGT
CTGATGGGCT TCGGACATCG CGTTTACAAG AACTTCGATC CGCGAGCTAA AGTGATGCGT
GAGACCTGTC ATGAAGTCTT AGGTGAGTTG AAAGTTAACG ATCCACTACT TGATGTAGCT
ATGGAACTCG AGCGTATTGC CCTTGAAGAT GAATATTTCG TCTCTAAGAA GCTGTATCCA
AATGTTGATT TCTATTCAGG CATCATCATG AAGGCTATCG GTATTCCAAC CAGCATGTTC
ACCGTACTAT TCGCACTTGC GCGTACTGTC GGTTGGATTG CTCACTGGAA AGAGATGCTG
GATCAGCCTG GTCATAAGAT CAGCCGACCT CGTCAGCTTT ACACCGGTGC AGCAGAGCGT
GATTTTATTT CAAAAGAGAA TCGTTAA
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| Protein sequence | MADNIAKLEL PGNESIDLPV KKGTAGFDVI DISKLGSKGH FTFDPGFLAT ASCESAITYI
DGDQGILLHR GYPIGELAVD SDYLDLCYLL LYGELPSKTQ YEKFCHTVKN HTMVNEQLAA
FFRGFRRDAH PMAMLCGVTG ALSAFYQDSL DVNDERHREI AAFRLVSKMP TIAAMCYKYS
IGQPFVYPRN DLSYAGNFLS MMFAVPCEEY KVNPIVERAM DRIFILHADH EQNASTSTVR
LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLKMLEEIG SVDRIPEFIA RAKDKEDPFR
LMGFGHRVYK NFDPRAKVMR ETCHEVLGEL KVNDPLLDVA MELERIALED EYFVSKKLYP
NVDFYSGIIM KAIGIPTSMF TVLFALARTV GWIAHWKEML DQPGHKISRP RQLYTGAAER
DFISKENR
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