| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2816 |
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| Symbol | sdhA |
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| ID | 5614002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3399721 |
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| End bp | 3401487 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933735 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001474551 |
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| Protein GI | 157375951 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0572429 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.870607 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTTCGCGA ATTTGATGCA ATTGTTATCG GCGCCGGTGG CGCGGGTATG
CGAGCCGCAT TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTGTTATC TAAAGTATTC
CCGACACGTT CTCATACGGT ATCTGCGCAG GGCGGTATCA CCGTTGCGTT AGGTAACGCC
CATGAAGATC ATTGGGAACA ACATATGTAC GATACGGTTA AAGGTTCCGA TTTTATCGGT
GATCAAGAAG CCATTGAGTT TATGTGTAAA ACCGGCCCGG AAGCGGTTAT CGAACTCGAA
CAGATGGGGC TACCTTTCTC TCGATTCGAA AATGGTAAAA TTTACCAACG ACCTTTCGGC
GGTCAATCTA AAAACTTTGG TGGTGAACAG GCTGCACGTA CCGCAGCAGC GGCTGACCGT
ACGGGTCATG CGCTTCTACA CTGTCTTTAC CAGCAAAATG TTAAGCACAA AACTGAAGTC
TATTCAGAGT GGTACGCACT GGACTTAGTG AAAAACGAAG ATGGCGCAAT CGTCGGTTGT
ACTGCAATCG ATATCGAAAG CGGTGAAATT GTTTACTTTA AAGCTAAGGC GACGGTACTT
GCTACCGGTG GTGCAGGGCG TATCTTCGCG TCTACTACCA ATGCTCATAT TAATACCGGT
GATGGTGTTG GCATGGCGAT GCGCGCTGGC GTGCAGATGC AAGACATGGA GATGTGGCAG
TTCCACCCAA CCGGTATTGC CGGCTCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA
GGCGGATACC TGCTGAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC ACCTAATGCG
AAAGATTTAG CATCTCGTGA CGTGGTTGCA CGTTCGATGA TGACTGAGAT CCGCGAAGGT
CGTGGTCTCG ATGGCCCATT AGGCCCACAC TGTCTGCTTA AACTCGATCA TCTGGGTAAA
GAAACGCTCG AAGCGCGTCT TCCGGGTGTG TGTGAACTTT CTCGTACCTT CGCCCATATC
GATCCTGCCG ATGGTCCAAT TCCAGTACTT CCGACTTGTC ACTATATGAT GGGTGGCCTA
CCGGCTAAAG TTAGCGGTCA GGTGATACGT AAGAATACAG ATGGCAGCGA GAGTGACGTT
ACTGGTCTAT TCGCCGTCGG TGAGATTGCC TGTGTATCTG TACACGGCGC TAACCGATTA
GGTGGTAACT CACTGCTTGA TTTAGTGGTC TTTGGACGCG CTGCGGGTCA ACACTTAGGT
AAAGCCCTGG ATGAGACTGC AACACCGATT GATGCGACAG AGGCTGATAT TGCTAAATCC
CTTGAGCGTC TCAATCGTTG GGAAGGCAAT AAAGACGGCG AAGATCCTGT TCAAATCCGT
AAAGACCTGC AGCTTTGTAT GCAGCTTAAC TTCTCAGTAT TCCGTCGGGG CGACGCGATG
GCTGAAGGCT TGAAAGAGCT TAAAGCAATC CGTAAGCGTT TGGACAATGC GAAGCTGTCT
GATAACTCAA CCGAGTTCAA TACTCAGCGT ATTGAGTGTT TAGAGTTAGA CAACCTGATG
TCAACGGCGA TAGCGACGGC CTATGCGGCA AACTATCGTA CCGAGAGTCG TGGTGCGCAC
TCACGTGAAG ATTATCTGGA CCGTGATGAT GAGAACTGGT TGTGTCATAG CCTGTTTGAC
CCTGCAACCG AAGAGATGGA TCGACGACCT GTAAACATGG AGCCTAAGCT TCGTGATGCA
TTCCCGCCGA TTAAGCGTAC TTACTAA
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| Protein sequence | MSIPVREFDA IVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQEAIEFMCK TGPEAVIELE QMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTEV YSEWYALDLV KNEDGAIVGC
TAIDIESGEI VYFKAKATVL ATGGAGRIFA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGSG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PAKVSGQVIR KNTDGSESDV TGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETATPI DATEADIAKS LERLNRWEGN KDGEDPVQIR KDLQLCMQLN FSVFRRGDAM
AEGLKELKAI RKRLDNAKLS DNSTEFNTQR IECLELDNLM STAIATAYAA NYRTESRGAH
SREDYLDRDD ENWLCHSLFD PATEEMDRRP VNMEPKLRDA FPPIKRTY
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