| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2815 |
|---|
| Symbol | sdhB |
|---|
| ID | 5614001 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3399003 |
|---|
| End bp | 3399710 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640933734 |
|---|
| Product | succinate dehydrogenase iron-sulfur subunit |
|---|
| Protein accession | YP_001474550 |
|---|
| Protein GI | 157375950 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0479] Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit |
|---|
| TIGRFAM ID | [TIGR00384] succinate dehydrogenase and fumarate reductase iron-sulfur protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.171032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.949201 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTGA ATATCGCAGT TTATCGCTAT AATCCTGATG TAGACGCTAA GCCTTACATG
AAGGATTACA CATTAGAAGT GGCTGAAGGT ACCGATATGA TGGTCCTCGA TGCCTTGATT
CTTCTAAAAG AGCAAGATCC AACGTTAGCT TTTCGCCGTT CATGCCGTGA AGGTGTGTGT
GGGTCAGATG GCTTGAACAT GAATGGTAAA AATGGTCTGG CGTGTATCAC GCCAATCTCT
ACTTTTAAAG GTAAAAAACT AGAGATCAGA CCACTACCGG GAATGCCCGT TGTTCGTGAT
GTTATTGTAG ACTTATCACA GTTCTACAAG CAGTATGAGA AGATCAAGCC ATACTTGATT
AACGATGAAA AAACGCCGGC GCGTGAACAT CTGCAATCTC CTGAACAGCG TGAACATTTA
GATGGTTTAT ATGAATGTAT CATGTGTGCT TGTTGTTCGA CCGCTTGCCC ATCTTTCTGG
TGGAATCCTG ATAAATTTAT CGGTCCAAGC GGCTTATTGC ACGCCTATCG CTTCCTGATC
GATAGTCGTG ATACAGCAAC TGAAGAGCGT TTATCTGAAC TCGATGATGC ATACAGCGTA
TTCCGTTGTC ACGGCATCAT GAATTGTATT GATGTCTGCC CTAAAGGCCT TAATCCAACG
AAAGCAATCG GACATATCAA GTCTATGTTG CTGAAGAGAG CGGTGTAA
|
|---|
| Protein sequence | MNLNIAVYRY NPDVDAKPYM KDYTLEVAEG TDMMVLDALI LLKEQDPTLA FRRSCREGVC
GSDGLNMNGK NGLACITPIS TFKGKKLEIR PLPGMPVVRD VIVDLSQFYK QYEKIKPYLI
NDEKTPAREH LQSPEQREHL DGLYECIMCA CCSTACPSFW WNPDKFIGPS GLLHAYRFLI
DSRDTATEER LSELDDAYSV FRCHGIMNCI DVCPKGLNPT KAIGHIKSML LKRAV
|
|---|
| |