| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2813 |
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| Symbol | |
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| ID | 5613670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3394784 |
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| End bp | 3395971 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933732 |
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| Product | 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase |
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| Protein accession | YP_001474548 |
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| Protein GI | 157375948 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | [TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.569652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTATCG AAATTAAGGT ACCCGTATTG CCAGAATCAG TTGCCGATGC AACTATTGCT
ACTTGGCACG TTCAAGCTGG TGAACAAGTT TCTCGTGATC AAAACTTGGT TGATATCGAA
ACCGATAAAG TTGTACTCGA AGTTGTGGCC CCTGAAGATG GTCAAATAGC GGAATTCTTA
GCCGAAGAGG GGGATACCGT CCTCGGTGAA GCCGTTATCG CTAAATTTGT TGCCGGCGCC
GTAGCGGGGC AGGAAGTGAC TAAAGCCGAA GCCGAAGCCG CGACTCCGGA GGTTTCTGAA
GACTCTAATG ACGCACTAAG CCCATCTGTT CGTCGCCTGA TTGCCGAGCA TAATCTTGAT
GCCGGTAAGC TAAAAGGTAC GGGTGTTGGT GGTCGTATCA CCAAAGAAGA TGTCGAAGCT
TTCGTTAAAA ACGCAAAAGC AACGCCAGCT CCAGCCAGCG CACCAGCGGC TATTGCACCT
TTAGCAGAGC GTAGCGAGAA GCGTGTTCCG ATGACGCGTC TTCGTAAGAC GATTGCTAAC
CGTCTTCTTG AAGCTAAAAA CTCAACGGCT ATGCTGACGA CGTTTAACGA AGTTAACATG
AAGCCAATCA TGGATATCCG TAAGCAGTAT CAGGAGATCT TTGAGAAGCG TCATGGTATT
CGTTTAGGCT TTATGTCTTT CTACGTAAAA GCTGTGACAG AAGCACTAAA ACGTTTCCCT
GAAGTTAACG CCTCTATCGA TGGCGATGAC TTGGTGTATC ACAACTACTT CGACGTTAGC
ATCGCGGTAT CTACGCCACG TGGCCTTGTA ACCCCGGTGC TTCGTGATAC AGATACGATG
AGCCTGGCCG ATATCGAACG TAATGTTCGT GAATTAGCCA TCAAAGGCCG TGACGGTAAG
CTAACTGTAG CCGACATGAC CGGCGGCAAC TTCACCATCA CTAACGGTGG TGTATTTGGC
TCACTCATGT CGACACCTAT TTTGAACCTG CCACAAAGCG CAATCTTAGG CATGCATGCC
ATTAAAGATC GCCCAATGGC AGTCAATGGG CAGGTTGAAA TACTGCCTAT GATGTACCTG
GCACTATCTT ATGACCACCG TATTGTCGAT GGTCGTGAGT CTGTTGGATT CTTGGTTGCC
ATTAAGGACT TCCTCGAAGA CCCAACTCGT TTACTGCTTG ATTTATAA
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| Protein sequence | MSIEIKVPVL PESVADATIA TWHVQAGEQV SRDQNLVDIE TDKVVLEVVA PEDGQIAEFL
AEEGDTVLGE AVIAKFVAGA VAGQEVTKAE AEAATPEVSE DSNDALSPSV RRLIAEHNLD
AGKLKGTGVG GRITKEDVEA FVKNAKATPA PASAPAAIAP LAERSEKRVP MTRLRKTIAN
RLLEAKNSTA MLTTFNEVNM KPIMDIRKQY QEIFEKRHGI RLGFMSFYVK AVTEALKRFP
EVNASIDGDD LVYHNYFDVS IAVSTPRGLV TPVLRDTDTM SLADIERNVR ELAIKGRDGK
LTVADMTGGN FTITNGGVFG SLMSTPILNL PQSAILGMHA IKDRPMAVNG QVEILPMMYL
ALSYDHRIVD GRESVGFLVA IKDFLEDPTR LLLDL
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