| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2804 |
|---|
| Symbol | |
|---|
| ID | 5613639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3386633 |
|---|
| End bp | 3388453 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933723 |
|---|
| Product | anaerobic ribonucleoside triphosphate reductase |
|---|
| Protein accession | YP_001474539 |
|---|
| Protein GI | 157375939 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
|---|
| TIGRFAM ID | [TIGR02827] anaerobic ribonucleoside-triphosphate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.438935 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACACA TACCCTCGGC GCTCATCGAA GAGAAAGTAC AATTTATACA AGATTACATC
GATGCCAGTA ATGCCGCAGA TGGGTCTAAG TATGATGCCA ACGCCAATGT CAGCAGTAAA
AATCTGGCGA CACTCGAGAC CGAGCTGAAT AAGGATATCA ATATTGCGGT AAACCGGCGT
CTGATGAAGA GCCAGATCGC AAACCTGTTC GATTCATCTC TGGCCGAGGA GTATGAGGGT
AGCATCAATG AACATCTGAT CTATGCCCAC GATGAAAGCT CACTAAAGCC CTATTGTGTG
AGTCTCTCTC TCTATCCCAT GTTGCTCGAT GGGCTGACTA AGTTGGGAGG TGAGTCTTTA
GCTCCCCTTC ACTTAGAATC TTTTTGCGGT TGCTTTGTTA ACTTAGTATT TGCCGTCAGC
GCACAATTTG CCGGTGCGGT GGCGACGGTT GAGTTTTTAA CCTACTTCGA CCATTTTGCC
CGTAAAGACT ATGGCGATGA TTATACCGTC ATCGCCAAAG ATAAGATTGA GGCGCACCTG
CAACACGTGG TCTATAGCCT GAACCAGCCA GCTGCAGCGC GGGGTTATCA ATCCGTATTC
TGGAATATCT CTCTGTTCTC GGAGGACTTT CTCAATGCCA TGTTTGAGAA CTTCGTGTTC
CCGGATGGTG ATGCGCCCAA CTGGCAATCG ATCAACAAAC TGCAGCACTT CTTCATGGAC
TGGTTTGGCA GAGAGCGAGA GATAGCCTTG CTGACGTACC CTGTTGTTAC GGCCGCTATG
TTGACCAACC AAGGTCAGGT AGCGGATGTG GAGTTTGCTG AGTTTTGCAG CGATCAGATG
TCGAAAGGGA ATAGCTTCTT CGTCTATATG TCTGAAAACG CAGATTCATT AGCGTCCTGT
TGTCGTCTGC GTAATGAAAT CGCCGATAAC AGCTTCTCCT ATACCTTAGG CGCAGGTGGG
GTTGCGACGG GCTCTATCAA TGTAATTACG CTGAATTTAA GCCGGGTTAT CCAGCAGGGT
AAAGATCTTC GCAGTGAGAT TGAAAAGATT CAAAAGTATC AGGTGGCTTA CAGAAAGCTG
ATGGAGCACT ACCAGGCGTG TGGCATGCTC CCTGTGTATG ATGCTGGCTT TATTCATCTC
GATAAGCAGT TTTTAACCAT AGGCATTAAC GGTATGGTCG AGGCTGCGGA GTCTCAAGGC
ATAGTTGCGG GCAATAATGG TGACTATAAG GCATTCGTAG AGCGCCAGCT TAAGATCATC
TACCAGGCCA ATAAAGATGC GACTAAACGC TGGGGATACA AATTTAATAC CGAATTTGTA
CCGGCGGAAA ACTTAGGCGT CAAGAACGCT AAATGGGACA GAAAAGCCGG GCTTAAGGTC
AACCGAGACT GCTACAACTC CTACTTCTAT CCGGTAGAGG ATGAATCAAT AAACCTGGTG
GATAAGTTTG TGCTCCATGG TAAAGAGCTG ACACAGTTTC TCGACGGAGG GTCGGCGCTG
CACCTGAATC TGGACGAAAA CCCGGATCCC GAGCAGTACT TCAAGATATA TCAGATAGCG
GCAAGGACAG GGTGTAACTA CTGGACGACG AATGTGAAGG TGACCATCTG TAACAGCTGC
AATCATATCG ATAAACGAAC CTTACACGCC TGTAGTGTCT GTAACAGTCA AGATATCGAT
TGGGCGACGC GGGTGATAGG CTACCTCAAG AAGGTCACGA GTTTCAGCGA GCCAAGACAG
AAGGAGCACG CGTTGAGACA TTATCATCGT GAAGAGACTA AGTATCATAG TGAAGAATCT
AAGTTGCAGA AAGTGAGCTA G
|
|---|
| Protein sequence | MEHIPSALIE EKVQFIQDYI DASNAADGSK YDANANVSSK NLATLETELN KDINIAVNRR
LMKSQIANLF DSSLAEEYEG SINEHLIYAH DESSLKPYCV SLSLYPMLLD GLTKLGGESL
APLHLESFCG CFVNLVFAVS AQFAGAVATV EFLTYFDHFA RKDYGDDYTV IAKDKIEAHL
QHVVYSLNQP AAARGYQSVF WNISLFSEDF LNAMFENFVF PDGDAPNWQS INKLQHFFMD
WFGREREIAL LTYPVVTAAM LTNQGQVADV EFAEFCSDQM SKGNSFFVYM SENADSLASC
CRLRNEIADN SFSYTLGAGG VATGSINVIT LNLSRVIQQG KDLRSEIEKI QKYQVAYRKL
MEHYQACGML PVYDAGFIHL DKQFLTIGIN GMVEAAESQG IVAGNNGDYK AFVERQLKII
YQANKDATKR WGYKFNTEFV PAENLGVKNA KWDRKAGLKV NRDCYNSYFY PVEDESINLV
DKFVLHGKEL TQFLDGGSAL HLNLDENPDP EQYFKIYQIA ARTGCNYWTT NVKVTICNSC
NHIDKRTLHA CSVCNSQDID WATRVIGYLK KVTSFSEPRQ KEHALRHYHR EETKYHSEES
KLQKVS
|
|---|
| |