| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2794 |
|---|
| Symbol | |
|---|
| ID | 5613436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3368015 |
|---|
| End bp | 3368560 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933713 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_001474529 |
|---|
| Protein GI | 157375929 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGCCC TTCGACAGGC AATTGGTGAC TTTATGCTTA CAGTAACTCA GCTTGTCAGG
AAGTGTGGTA TCTCCAGGGC AAGCATCCTC TATTACGAGA GAGAAAACCT GCTGACACCG
GCATTTCGCT CGGATAACGG ATATAGGTGG TATGGCGAAC GTGAGATTGA GCGGTTAAAG
GCCATCGTCT CATATCGCTC CTTTGGGATA GCTGTAGCCA ATATCGGCAC CTTGCTGGAT
CGTAATGGAG GCCAGTCTCA AACTCAAATA TTGAAAGATC ACTTCAATGA GTTGGAAAAA
GAGATAGCCC TTTTAAAAGA TCAGCAGAAA GCCATTCTTG CTTTACTGCA GGAGCCAAAA
TTGTTGGAGG AAAACATGGT AACAAAAGAG CGTTGGGTAG AGATAATGAA AGCATCCGGA
TTTGATGAAC AGGCGATGCG CACCTGGCAT CAAAACTTTG AGAAAATGGA GCCTGAAGAA
CACCAAAAAT TCCTGGAATC ACTGGGAATT GATGATGAAG AGATAGCCGC GATAAGAAAG
CCGTAA
|
|---|
| Protein sequence | MIALRQAIGD FMLTVTQLVR KCGISRASIL YYERENLLTP AFRSDNGYRW YGEREIERLK
AIVSYRSFGI AVANIGTLLD RNGGQSQTQI LKDHFNELEK EIALLKDQQK AILALLQEPK
LLEENMVTKE RWVEIMKASG FDEQAMRTWH QNFEKMEPEE HQKFLESLGI DDEEIAAIRK
P
|
|---|
| |