| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2792 |
|---|
| Symbol | |
|---|
| ID | 5613434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3366625 |
|---|
| End bp | 3367230 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933711 |
|---|
| Product | ribosomal protein N-acetylase-like protein |
|---|
| Protein accession | YP_001474527 |
|---|
| Protein GI | 157375927 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1670] Acetyltransferases, including N-acetylases of ribosomal proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTAA GGCCAGGGCG GCCTTTTATT GATACAGGCT CACAAGGAGA GGGGATGGAA
GCGGAAACAG AAGAATCAAA AATTGAAACA GAAACCGAGC GATTGGTGCT CAGACGGTTC
TCTTTAGCCG ATGTTGCCGG TTTTTACGGG CTTAACCTTG ACCCTCATGT GCTTAAATAT
ACGGGCGATA AGCCGTTCAG CAGCCCTGAT GAAGTCTCTA AGTTTATTCG GAACTATGAA
CAGTATAAAA AGTATGGCTT TGGCCGCTGG TCCCTATATC TGAAAAGCTC CAATGAATAT
ATAGGCTTTT GTGGGTTGAG GCGGTCAGCA GAAACCGGTG AGGTGGATAT CGGTTTTAGA
CTGATGCAAA GATTCTGGCA TCGGGGCTAT GCGTTCGAGT CAGCCAAAGT TGTATTGGAA
TTAGCATTTA CTCGTTATGG CGTCGACAGG GTCATCGCCA GAGCCATGAA GGATAACCAG
GCGTCCCATC TGTTGATTCA AAAGCTGGGC ATGCAACTTG ATTCGAGTTT TACTGAGTCG
GGTGAGGAGT GGCTGAAATA TGAACTTCAT AAAGATGTTT GGTTGCGATA TTACAGTCTC
AAGTGA
|
|---|
| Protein sequence | MPLRPGRPFI DTGSQGEGME AETEESKIET ETERLVLRRF SLADVAGFYG LNLDPHVLKY
TGDKPFSSPD EVSKFIRNYE QYKKYGFGRW SLYLKSSNEY IGFCGLRRSA ETGEVDIGFR
LMQRFWHRGY AFESAKVVLE LAFTRYGVDR VIARAMKDNQ ASHLLIQKLG MQLDSSFTES
GEEWLKYELH KDVWLRYYSL K
|
|---|
| |