| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2785 |
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| Symbol | |
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| ID | 5612813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3359111 |
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| End bp | 3359800 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933704 |
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| Product | helix-turn-helix, type 11 domain-containing protein |
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| Protein accession | YP_001474520 |
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| Protein GI | 157375920 |
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| COG category | [K] Transcription |
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| COG ID | [COG2378] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.899973 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCG CCGATAGATT ATTTCAAATT GTACAAATAT TAAGACATCG AAGGCTCACG
ACCGCCAAGG AGTTGGCAGA GCGATTAGAG GTATCGACAC GGACCATTTA CCGTGACGTA
CAAGACTTGT GTCTGAGCGG TATTCCCATC GAAGGAGAGG TGGGTGTGGG ATATCTGTTG
CGCCAAGAGG TGAGTGTTCC TCCTCTGATG TTTAATGAGG TCGAGCTCGA AGCGATACAA
GTCGGGATGC GTATGGTGCA GGCGCGGGGC GGAAAAGAGT TAGCCAGCGC AGCCAGACAG
GCGATGATTA AAGTGGAGGC CGTGTTGCCG ACGCGGTTGC AGGAATATCA ATCTTTGATG
TTTGCCCCCG ACTTCTATAT CGACAGTGAT GAATTTGAAT TCTTGGATCT GCTTCGCAAA
ACCTCCAGAG AGCGGGAGTA CCTGCAGATG GATTATAAAG ATGCTAAGGA AGCGGTGACC
CGGCGGGAGT TACGTCCTCT GGCCATCTAT TTCTGGAAAG GATTATGGAC CCTGCTTGCC
TGGTGTGAAC TGCGAAACGA TTTTCGAAAC TTCAGGGTAG ACCGGATAGC CGACTTGACT
CCACTGGGGC GTCATTTCGG CCTGACGCCC GGTCAGGAGA TGCATGACTA TATCGAGTTG
ATGGAAGCCG AGTATGGCAG TCGAAACTGA
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| Protein sequence | MRRADRLFQI VQILRHRRLT TAKELAERLE VSTRTIYRDV QDLCLSGIPI EGEVGVGYLL
RQEVSVPPLM FNEVELEAIQ VGMRMVQARG GKELASAARQ AMIKVEAVLP TRLQEYQSLM
FAPDFYIDSD EFEFLDLLRK TSREREYLQM DYKDAKEAVT RRELRPLAIY FWKGLWTLLA
WCELRNDFRN FRVDRIADLT PLGRHFGLTP GQEMHDYIEL MEAEYGSRN
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