| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2784 |
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| Symbol | |
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| ID | 5612812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3357680 |
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| End bp | 3358990 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933703 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474519 |
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| Protein GI | 157375919 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2706] 3-carboxymuconate cyclase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.562572 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATTGA TAAAGTTAAT ACAGCGCCTC TTGCCCTTGC TGGTGTGCGC CTCACTTTTC
GGTTGCTCCC TCACTTCTCA TAGTACAAGT TCAGATAGCA AGCTCACTGC GACAATTCCT
ACGACAATGG TGCAGGTATT GATTGATAAC GAAGCGTGCA TCGATGGCTT AGATAACCCC
AGAGCGGTAA AAATCTCCCC CGATGGCACT CACGCTGTCG TTGCCAGCGG TGACGATAAT
TCACTGGCTA TCTTCGATAT AGATGATGAT TTCACCTTGA GTTTTAATCG GGTATTTAGA
AACAATAGCT ATGGCGTTAC CGGTCTGGAG GGCGCTTCGC AGGTGGCTTT TCTTCCCAGT
GGTAATAAGA TGTTTACCGT GAGCTTTTAT GACAGTGCGC TGGTGGTCTT CGAGCGCGGT
GAAGAACATC AATATAGGTT CAAGCGCAGG CTGAGTGACG GGCTGAGTAT TGAACGCATC
TTTAAGGACC CGGAGCCCTT TGGGGCTATA GATACACTAG GTTTACTAGG GGCTTGGGAT
GTCGTTGTTT CCGGCGATGG CCAACAGCTA TTTATTGCCA GTTATAAGAG TAATGCGCTC
TCGGTATTTG ACGTATCAGG TGACAAGGTG GTTCCTAATC GAGTCGAGGG AGGGGAGTCG
GGGTTAGGTG GCGCCGTAGC GCTCGCCCTG TCAGCCGATA ATACTCTACT GGCTATTACA
GGCTTTGATG AACATATGCT GACACTATAT AACCGCACAA TGGATGGTGA GTTAGAGTTA
AGTCAGACCT TGAGAGGAGG GGATGTGGGG ATCCCTCAGC TGGTTAACCC ACAAGCCGTT
AGATTTTCGC CCGATGGTCA TTTTATCTAT GTCGCCTGTT CGGGAAGTGA CGCTATTGTG
GTACTTAATC GAATTGAAGA AGTGTCCGGT TCTGGGACCG GGAAAGGGGA AGATGCGGCA
AAGTATGCCC TGTTCCAAAT CCTGACCAAC GATCAACTCG GCGGTGGCTT GAAAGGTGCC
GGCAGTTTAG CTGTTTCACC GGATGGACAG AGCGTTTTCG CTGCCGGTGA GGCTGATAGC
GGTGTACTCG TGTTGAGAAA AGAAAATGAC GGTCGGTTAA GCCTTGAATC AAAACTCTTT
GATACTGAGT TGGTAAATAA AGGCTTACCC GCCGGTGACA ACAAAGACAT TAATCTCCTG
GTAGGAGTCT CGTCACTTCA GCTCTCAAAA GATGGTCAAT ACTTGCTGGT GACGGCGGCA
AAGCAAGATT CACTTTATGT ACTTAAGCTA AAGGCTAGCG TATCAAAATA G
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| Protein sequence | MPLIKLIQRL LPLLVCASLF GCSLTSHSTS SDSKLTATIP TTMVQVLIDN EACIDGLDNP
RAVKISPDGT HAVVASGDDN SLAIFDIDDD FTLSFNRVFR NNSYGVTGLE GASQVAFLPS
GNKMFTVSFY DSALVVFERG EEHQYRFKRR LSDGLSIERI FKDPEPFGAI DTLGLLGAWD
VVVSGDGQQL FIASYKSNAL SVFDVSGDKV VPNRVEGGES GLGGAVALAL SADNTLLAIT
GFDEHMLTLY NRTMDGELEL SQTLRGGDVG IPQLVNPQAV RFSPDGHFIY VACSGSDAIV
VLNRIEEVSG SGTGKGEDAA KYALFQILTN DQLGGGLKGA GSLAVSPDGQ SVFAAGEADS
GVLVLRKEND GRLSLESKLF DTELVNKGLP AGDNKDINLL VGVSSLQLSK DGQYLLVTAA
KQDSLYVLKL KASVSK
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