Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2779 |
Symbol | |
ID | 5613092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3351379 |
End bp | 3352563 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640933698 |
Product | glycerate kinase |
Protein accession | YP_001474514 |
Protein GI | 157375914 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1929] Glycerate kinase |
TIGRFAM ID | [TIGR00045] glycerate kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.357218 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATAG TTATCGCCCC CGATTCATTT AAAGAGAGCC TGAGTGCGAT GGAAGTGGCC AATGAAATTG AAGGCGGCTT CAAGTCGGTC ATGCCTGACG CCGAATTCAT CAAGGTGCCC GTTGCCGATG GCGGAGAGGG CACGGTGCAA TCTATGGTGG ACGCGACACA GGGAGAGATC ATTGAACTTG AGGTTACCGG CCCCTTGGGT AACCGGGTCC GCGCTCACTA TGGCATCTTA GGAGTTGGCA TTCCTGTAGA TGACATTTCA GATAACACCT CTCACTCTCG TAAGAGGACT GCCATTATCG AGATGGCCTC CGCCTCGGGT CTGCACCATG TCGGCGCCCA GCACAGAGAT CCTGAGATAA CCACCAGCTA TGGAACGGGA GAGCTTATCT GTGATGCCCT CAACCGTGGC ATTCAACGAA TTTTAATCGG TTTAGGTGGC AGCGCCACTA ACGATGGGGG TGCCGGTATG GCTCAGGCCC TCGGCATCCA TCTTCTGGAC GTTAATAATA AAGTGTTAAG TGTGGGCGGT GCAGCGCTAA GCAGACTACA CAGCATAGAT CTCACCGACC GCCACCCCTT GATTGAACAG TGCGAGTTTG AGGTCGCTTG CGACGTCAAT AATCCGCTGT GTGGAGACAC GGGAGCCTCG AGCGTTTTCG GGCCACAAAA AGGCGCCACG CCAGAGATGG TCGTCACCCT GGATAACGCG CTATCACAAT ATGCCGATGT GATTGTACAG TCCGGCATAA CCGACAGACG ACATAGCCCG GGAGCAGGCG CTGCAGGCGG CATGGGGCTC GGTGTAATGG CCTTTCTTAA TGCGTCACTC AGACCCGGCA TCGACATTGT CATGCAAACC GTCAACCTGG CCGAGAAGCT CAAAGGCGCC GACTTAGTGA TCACAGGTGA GGGACGACTC GACAGCCAAA CCCTACACGG TAAAACTCCT ATGGGAGTCA CGCGTCTCGC CAATGCACAA AATATCCCTG TCATCGCCAT AGCAGGCTGT GTCAGTGATG ATGCCAACGT ACTTCTGCAA CATGGAATGA AGGCCATTTT CTCTATCACA CCAAGGGCGA TGCCACTAGA AGATGTATTG GCCAATGCCA AGCATAATCT GTACACAAGT TCTCAAAATA TAGCGGCCCT GTATGCCATG AACTTGTCAG ATTAA
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Protein sequence | MKIVIAPDSF KESLSAMEVA NEIEGGFKSV MPDAEFIKVP VADGGEGTVQ SMVDATQGEI IELEVTGPLG NRVRAHYGIL GVGIPVDDIS DNTSHSRKRT AIIEMASASG LHHVGAQHRD PEITTSYGTG ELICDALNRG IQRILIGLGG SATNDGGAGM AQALGIHLLD VNNKVLSVGG AALSRLHSID LTDRHPLIEQ CEFEVACDVN NPLCGDTGAS SVFGPQKGAT PEMVVTLDNA LSQYADVIVQ SGITDRRHSP GAGAAGGMGL GVMAFLNASL RPGIDIVMQT VNLAEKLKGA DLVITGEGRL DSQTLHGKTP MGVTRLANAQ NIPVIAIAGC VSDDANVLLQ HGMKAIFSIT PRAMPLEDVL ANAKHNLYTS SQNIAALYAM NLSD
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