Gene Ssed_2779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2779 
Symbol 
ID5613092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3351379 
End bp3352563 
Gene Length1185 bp 
Protein Length394 aa 
Translation table11 
GC content53% 
IMG OID640933698 
Productglycerate kinase 
Protein accessionYP_001474514 
Protein GI157375914 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1929] Glycerate kinase 
TIGRFAM ID[TIGR00045] glycerate kinase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.357218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG TTATCGCCCC CGATTCATTT AAAGAGAGCC TGAGTGCGAT GGAAGTGGCC 
AATGAAATTG AAGGCGGCTT CAAGTCGGTC ATGCCTGACG CCGAATTCAT CAAGGTGCCC
GTTGCCGATG GCGGAGAGGG CACGGTGCAA TCTATGGTGG ACGCGACACA GGGAGAGATC
ATTGAACTTG AGGTTACCGG CCCCTTGGGT AACCGGGTCC GCGCTCACTA TGGCATCTTA
GGAGTTGGCA TTCCTGTAGA TGACATTTCA GATAACACCT CTCACTCTCG TAAGAGGACT
GCCATTATCG AGATGGCCTC CGCCTCGGGT CTGCACCATG TCGGCGCCCA GCACAGAGAT
CCTGAGATAA CCACCAGCTA TGGAACGGGA GAGCTTATCT GTGATGCCCT CAACCGTGGC
ATTCAACGAA TTTTAATCGG TTTAGGTGGC AGCGCCACTA ACGATGGGGG TGCCGGTATG
GCTCAGGCCC TCGGCATCCA TCTTCTGGAC GTTAATAATA AAGTGTTAAG TGTGGGCGGT
GCAGCGCTAA GCAGACTACA CAGCATAGAT CTCACCGACC GCCACCCCTT GATTGAACAG
TGCGAGTTTG AGGTCGCTTG CGACGTCAAT AATCCGCTGT GTGGAGACAC GGGAGCCTCG
AGCGTTTTCG GGCCACAAAA AGGCGCCACG CCAGAGATGG TCGTCACCCT GGATAACGCG
CTATCACAAT ATGCCGATGT GATTGTACAG TCCGGCATAA CCGACAGACG ACATAGCCCG
GGAGCAGGCG CTGCAGGCGG CATGGGGCTC GGTGTAATGG CCTTTCTTAA TGCGTCACTC
AGACCCGGCA TCGACATTGT CATGCAAACC GTCAACCTGG CCGAGAAGCT CAAAGGCGCC
GACTTAGTGA TCACAGGTGA GGGACGACTC GACAGCCAAA CCCTACACGG TAAAACTCCT
ATGGGAGTCA CGCGTCTCGC CAATGCACAA AATATCCCTG TCATCGCCAT AGCAGGCTGT
GTCAGTGATG ATGCCAACGT ACTTCTGCAA CATGGAATGA AGGCCATTTT CTCTATCACA
CCAAGGGCGA TGCCACTAGA AGATGTATTG GCCAATGCCA AGCATAATCT GTACACAAGT
TCTCAAAATA TAGCGGCCCT GTATGCCATG AACTTGTCAG ATTAA
 
Protein sequence
MKIVIAPDSF KESLSAMEVA NEIEGGFKSV MPDAEFIKVP VADGGEGTVQ SMVDATQGEI 
IELEVTGPLG NRVRAHYGIL GVGIPVDDIS DNTSHSRKRT AIIEMASASG LHHVGAQHRD
PEITTSYGTG ELICDALNRG IQRILIGLGG SATNDGGAGM AQALGIHLLD VNNKVLSVGG
AALSRLHSID LTDRHPLIEQ CEFEVACDVN NPLCGDTGAS SVFGPQKGAT PEMVVTLDNA
LSQYADVIVQ SGITDRRHSP GAGAAGGMGL GVMAFLNASL RPGIDIVMQT VNLAEKLKGA
DLVITGEGRL DSQTLHGKTP MGVTRLANAQ NIPVIAIAGC VSDDANVLLQ HGMKAIFSIT
PRAMPLEDVL ANAKHNLYTS SQNIAALYAM NLSD