| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2770 |
|---|
| Symbol | |
|---|
| ID | 5612613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3339740 |
|---|
| End bp | 3340603 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640933689 |
|---|
| Product | heat shock protein HtpX |
|---|
| Protein accession | YP_001474505 |
|---|
| Protein GI | 157375905 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0501] Zn-dependent protease with chaperone function |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000066103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00393071 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCGTA TTTTTTTATT GATTGCGACG AACATGGCAA TCTTACTCGT GGCCTCTATC
GTGATGTCGA TTCTAGGGGT TAATACATCG ACCATGGGCG GCTTACTCGT GTTTGCTGCT
ATTTTTGGTT TTGGCGGCGC ATTTATCAGT TTGGCTATCT CAAAGTGGAT GGCGAAGAAA
ACCATGGGTT GTGAGGTTAT TACCACACCT CGTGATAACA CCGAGCGTTG GTTAGTTGAA
ACCGTTGCCC GTCAAGCGGA GCAAGCCGGT ATCAAGATGC CTGAAGTGGC CATCTATCAA
TCTCCCGAGC TTAATGCTTT TGCTACCGGC CCGAGTAAAG ATAACTCGCT GGTCGCTGTG
AGTAGTGGTC TGCTATATGG CATGAGCCAG GATGAGATCG AAGGTGTCCT CGCCCATGAA
GTCAGCCATG TCGCTAACGG TGATATGGTG ACCCTGACCT TAATTCAGGG CGTAGTTAAC
ACCTTCGTTA TCTTCGCTGC ACGTGTCGTT GCCGGTATCA TCAACAACTT CGTTTCCAGT
AACGATGAAG AGGGTGAAGG CCTGGGGATG TTTGCTTACA TGGGCGTCGT GTTCGTGTTG
GATATGCTAT TTGGTATTCT CGCGTCTATG ATCGTAGCCT ACTTCTCCCG TATTCGAGAG
TTTAAAGCCG ATGAGGGTGG TGCTCGCCTG GCGAGTAAAG AGAAGATGAT TGCTGCACTC
GATCGTCTAC GTCAGGGCCC GGAAACCGGT GCGATGCCGG CTCAGATGGC CGCATTTGGT
ATCAACGGCA AAAAGTCGAT GGCCGAAATG ATGATGAGTC ACCCACCTCT TGAAAAGCGC
ATCGCTGCAT TGAGAGCGAG CTAA
|
|---|
| Protein sequence | MKRIFLLIAT NMAILLVASI VMSILGVNTS TMGGLLVFAA IFGFGGAFIS LAISKWMAKK
TMGCEVITTP RDNTERWLVE TVARQAEQAG IKMPEVAIYQ SPELNAFATG PSKDNSLVAV
SSGLLYGMSQ DEIEGVLAHE VSHVANGDMV TLTLIQGVVN TFVIFAARVV AGIINNFVSS
NDEEGEGLGM FAYMGVVFVL DMLFGILASM IVAYFSRIRE FKADEGGARL ASKEKMIAAL
DRLRQGPETG AMPAQMAAFG INGKKSMAEM MMSHPPLEKR IAALRAS
|
|---|
| |