| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2765 |
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| Symbol | |
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| ID | 5612768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3332844 |
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| End bp | 3335516 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933684 |
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| Product | nitrite reductase (NAD(P)H), large subunit |
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| Protein accession | YP_001474500 |
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| Protein GI | 157375900 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0345886 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGTGTA TAAAAACTGA GCTAAACCTA AAACCAAAAT TACTCGTTAT AGGTAATGGC
ATGGTCGGTC ATCACTTTAT CGAGCAACTG TGCGATCAAG GGCTGAATGA GCAGTTTCAG
GTGGAGGTGT TTGGCTGTGA GAATCTCCCG GCCTATGACA GGGTTCAGCT GTCAAAGTAC
TTTGAGACAG GCAGCCCTGA GGCGTTGATG TTGGCCAGTG TGGATGAATA TGCGAAGCAG
GGAATAATGC TTCATCTGGG TAAAGAGATC GTTCGTCTGG ACACCGAAAA TCGAACGGTC
TACAGCTCTG ATGATGAGAT TTGGAGTTAT GACAAACTTG TACTCGCCAC AGGATCCTAC
CCTTTCGTTC CGCCAATCCA AGGTAAAGAA CGTCCACAAT GTCTGGTTTA CCGCACTATC
GACGACCTCG AGCAGATAAG TCAGGCAGCG CAGAGTGCCA ACTCCGGCGT GGTTATCGGT
GGAGGTTTAT TGGGTCTGGA GGCCGCGAAT GCGCTGTTAA CCCTGGGGTT AGAGACTCAT
GTCGTGGAGT TTGCGCCACA ACTGATGCCC GTTCAACTCA ATGATAAGGC GGGTGAGCTG
CTGTGTGAAA AAATTCAGGC CCTGGGTGTG TCGGTGCACA TCAGCAAGGC GACGACCGCC
ATCATTGACG GTGAACATGC CCGCCATCGA ATGACGTTTA ACGACGATAG TTACCTTGAA
ACGGATCTCA TCGTCTTCTC TGCAGGCATT CGTCCGCAAG ATACCTTAGC GCGCCAAAGT
GGCATTGAAG TGGGTGAACG CGGTGGTATT AGTGTGGACA ACCACTGCTT AACCTCTGCA
CCGGATGTGT ATGCCATCGG CGAATGTGCA CTCTGGCAGC AGCGCATTTT TGGCTTAGTG
GCGCCGGGTT ACCAGATGGC GAGAGTCGCG CTGTCCCATA TAGCAGCGGG CATTTCAGGC
TCAGTGGCAA CTCAGTTTAA AGGCGCTGAC ATGAGCACTA AGCTTAAGCT TCTGGGCGTT
GATGTGGCTT CAATCGGTGA GAGTCGTGGG TTTGAAAATG CACAATATGT GGAACTCAAT
GATAACCAAA GTGGTACCTA CAAGAAGCTC TGGTTGGATG AAACAGGACA ATACCTCAAA
GGCGCCGTGC TCGTCGGCGA TGCCAGTGAT TATAGTCTGT TGTTAAACCA ATATCTGTCC
GGTGAAAAAA TTGAAACGCC GGCGATATCA CTGCTGCAGC AAGATAGTGA TGCACCTATG
ACGTTAAATG ATGATGCCAT CATCTGCTCC TGTCATCAGG TGACCAAAGC GGACATCGTT
GAGAGAGTCG TCGCAGGTGA CCACAGCCTA GCGGCCATCA AGGCATGTAC TAAGGCCGCA
TCGGGCTGCG GTGGCTGTGG TGCTTTGGTT CAAGAGATCA TCAGCCAGAC CATGGAGGCG
CAGGGTTTAG AGACGCAAAA GGGCATATGC AGCCATTTCG AGCATGACAG GCAGGCACTG
TTTCACCTGT GTCAGGTCGA CGGCATCTCA AATTTCTCCA ACCTGATCGG TAAACATGGA
ACGGCTGACG CTGCCAAGTT GGGTTTAGGG TGTGATATCT GTAAGCCGCT GGCGGCATCG
ATTTTCGCAT CATTAGAAAA CGAGTACGTC CTCGTTGTTG AACATGCCAA CCTTCAAGAC
AGTAACGATG CTTATCTGGG TAACCTTCAA AAAGATGGCT CTTACTCTGT CGTGCCCAGA
ATTGCCGGTG GTGAGATCAC CCCGGATAAG TTGATCGCTC TGGGGGAGAT CGCCAAGCGC
CATGATCTGT ATACCAAGAT CACCGGTGGA CAACGTATCG ATCTGTTCGG CGCCGCCCTG
TCTGACCTGC CCACAATTTG GCAAGCATTG ATAGAGCAAG GGTTTGAGAC GGGCCACGCC
TACGGTAAAT CACTCAGAAC GGTTAAATCC TGTGTAGGAA GTACCTGGTG TCGTTACGGA
GTACAGGACT CAGTGGGTAT GGCAATAGAG CTTGAGAATC GCTACAAGGG GCTGCGGGCA
CCCCATAAGA TTAAGTTTGC CGTTTCCGGC TGCACTAGGG AGTGCGCCGA GGCGCAGAGT
AAGGATATAG GGGTGATTGC AACGGACAAG GGGTGGAACC TTTATGTGGG CGGCAATGGG
GGTATGCGTC CACGCCATGG TGATCTGTTT GCAACCGATC TATCAACCTC TCTGTTGGTG
CAATACATAG ACAGGATATT GATTTTTTAT ACAAGAACGG CCTCGAGACT GCAGCGCACC
TCTGTTTGGC TTGAGTCTTT AGAGGGGGGA TTAGATTACC TTAAGTCGGT GATCATCGAT
AACAGCTTGG GTTTAGCTGA TGAACTTGAG ATCCAGATGC AAAAGGTGAT CTCGACCTAT
CAATGCGAGT GGAAAACCAG TCTGGAAAGC CCCGAATTTC TGACCCGATT TAGCGAATTT
ATTAACCCCG CGCAGGAACC CAATGCAGAT GTAGAACAAT ACCGATATTC GAGAGGGCAA
CGCTTTCCCG TCGATGCAAA AGGGGGAGCG GGGATTATTC CTGTGATGAA TATCGGTCTC
TGCACCGTCG ATAAAGATCT GGATGGTTTA GCCGTTCAAG TCAGCTCGGT AGCTCTTGTT
GAAGAATCGG CCCAAAAGGA GTGTGAAGTA TGA
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| Protein sequence | MGCIKTELNL KPKLLVIGNG MVGHHFIEQL CDQGLNEQFQ VEVFGCENLP AYDRVQLSKY
FETGSPEALM LASVDEYAKQ GIMLHLGKEI VRLDTENRTV YSSDDEIWSY DKLVLATGSY
PFVPPIQGKE RPQCLVYRTI DDLEQISQAA QSANSGVVIG GGLLGLEAAN ALLTLGLETH
VVEFAPQLMP VQLNDKAGEL LCEKIQALGV SVHISKATTA IIDGEHARHR MTFNDDSYLE
TDLIVFSAGI RPQDTLARQS GIEVGERGGI SVDNHCLTSA PDVYAIGECA LWQQRIFGLV
APGYQMARVA LSHIAAGISG SVATQFKGAD MSTKLKLLGV DVASIGESRG FENAQYVELN
DNQSGTYKKL WLDETGQYLK GAVLVGDASD YSLLLNQYLS GEKIETPAIS LLQQDSDAPM
TLNDDAIICS CHQVTKADIV ERVVAGDHSL AAIKACTKAA SGCGGCGALV QEIISQTMEA
QGLETQKGIC SHFEHDRQAL FHLCQVDGIS NFSNLIGKHG TADAAKLGLG CDICKPLAAS
IFASLENEYV LVVEHANLQD SNDAYLGNLQ KDGSYSVVPR IAGGEITPDK LIALGEIAKR
HDLYTKITGG QRIDLFGAAL SDLPTIWQAL IEQGFETGHA YGKSLRTVKS CVGSTWCRYG
VQDSVGMAIE LENRYKGLRA PHKIKFAVSG CTRECAEAQS KDIGVIATDK GWNLYVGGNG
GMRPRHGDLF ATDLSTSLLV QYIDRILIFY TRTASRLQRT SVWLESLEGG LDYLKSVIID
NSLGLADELE IQMQKVISTY QCEWKTSLES PEFLTRFSEF INPAQEPNAD VEQYRYSRGQ
RFPVDAKGGA GIIPVMNIGL CTVDKDLDGL AVQVSSVALV EESAQKECEV
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