Gene Ssed_2764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2764 
Symbol 
ID5612477 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3332512 
End bp3332847 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content49% 
IMG OID640933683 
Productnitrite reductase (NAD(P)H), small subunit 
Protein accessionYP_001474499 
Protein GI157375899 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.140502 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTGGT TAGCTATTTG CGAAGAGAGT GCGCTGCCGG TGTTTGGCGG GATCGCAGCA 
TGGGTAGAGG GTAAAGCCGT TGCCATTTTC AATCTGGGCG AGCAGGGCAT ATTTGCCATG
GATAACACAG ACCCTGCGAC TGGCGTCGGC GTGCTGTCAC GGGGCTTAAT CTGCGATCTG
CAGGGGGATA TTTTTGTCGC TTCACCTCTG CATAAACAAC ATTACAGCTT AACAAACGGG
CAGTGTATGG AAGATGAAAG CTTAAGTGTT GAGCTGTATT GGATCAAATG TGAACAGGGC
AAGGTGTTAA TCTGCACCGC AATTGTAGGG GAATAA
 
Protein sequence
MNWLAICEES ALPVFGGIAA WVEGKAVAIF NLGEQGIFAM DNTDPATGVG VLSRGLICDL 
QGDIFVASPL HKQHYSLTNG QCMEDESLSV ELYWIKCEQG KVLICTAIVG E