| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2760 |
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| Symbol | |
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| ID | 5612009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3327028 |
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| End bp | 3328206 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933679 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001474495 |
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| Protein GI | 157375895 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.258861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.160346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGGA TTTTTCATCG TGTCGTTCCG GCCATTGCCG CTTTAATGTT AATGACAGCG
TGTTCGAGTC ATATTTCATC CGTTAGCTCG GCTACACCCG TTATGCCGCA GATGAATGAT
AATCTGTTTG TATCGGGCAG TGATGTCACA TCTACACCCA TACCTGGATT CGAGCGTTTA
ATGGCGTTGA CGCCGGAACA GATAGAAGAT CTTCACCAGT TTGTTAGTCG TGACGATATT
GCTCAGTTAC CCAAAAATAA GCAAGTGCGT GAGTATCTGT TCACTAAGTT GGTCAATTTC
AATTATGAGG GAGAGAATTA CTCGGCAAGT GTAGCACTCG AGAAAGGGAG CGGTAACTGC
ATGACATTGG CGCTCCTAAC CTATGCGGTA GCGAGAGAGT TGGGGGTTAA AGCCGTGTTT
CAGGTGATGC ATACCCCGCC TATGCTGCTG GAGGTCACCT CAGATCTTGC TGTTACTTCG
GACCATGTCC GTACTTTTCT TTATGAAGAT GATACCGACA ATAAAGGATT TTATTTTTCA
GGACGTACAT ATGTCATTTT GGATTATTTT CCGGATAGAT ACGATAGGGG GGGGAGGAAG
ATAGGTGAGC AGCAATTTAT CGGTATGCTC TATCGAAATT TTGCAGCCGA TGCGCTGTTG
GATGGAGATC TGAATCGGGC CTTCTCTCTG CTAAAAACCG GAACGCAATA CACTCAAGAG
TATGCACCAC TGCTGAATAT GTTGGCAATC ATTCATCGCC GAGCTGGGGA TGATGAAACG
GCTAAAGAGT TTTATCGATA CGCGCTCAAT GTTTCAGAAT CTAAGATCAC TCTTTTGAGT
AACTACCACT ATCTATTAAC CCTGAACGGG GAGGTGGAGG CCGCCCATCG CGTTAAGTTG
CAGCTATTGG CTCTGGAAGA CTCGAGCCCC TATAGTTGGT ACGTGATGGG AAAGGAGGCC
CTGGATGAGG GAGATAATCA GAGTGCTAAA ATCTACCTAA AAAAGTTTCT ACAAAACACG
CCCTATTACC ACAGGGCATA TTTTGATCTG GCCAAGGCAC AATATGCGCT TGGTGAGTCA
GTCGCCGCAA GAAGCTCATT ATCTCAGGCA CTCTCTTATG CCGAGTTACC TGAAAGCCAA
AGGCAATATC AAGCCAAGCT CGCCTGGTTA AATCAATAA
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| Protein sequence | MKRIFHRVVP AIAALMLMTA CSSHISSVSS ATPVMPQMND NLFVSGSDVT STPIPGFERL
MALTPEQIED LHQFVSRDDI AQLPKNKQVR EYLFTKLVNF NYEGENYSAS VALEKGSGNC
MTLALLTYAV ARELGVKAVF QVMHTPPMLL EVTSDLAVTS DHVRTFLYED DTDNKGFYFS
GRTYVILDYF PDRYDRGGRK IGEQQFIGML YRNFAADALL DGDLNRAFSL LKTGTQYTQE
YAPLLNMLAI IHRRAGDDET AKEFYRYALN VSESKITLLS NYHYLLTLNG EVEAAHRVKL
QLLALEDSSP YSWYVMGKEA LDEGDNQSAK IYLKKFLQNT PYYHRAYFDL AKAQYALGES
VAARSSLSQA LSYAELPESQ RQYQAKLAWL NQ
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