| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2754 |
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| Symbol | |
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| ID | 5611840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3322376 |
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| End bp | 3323380 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933673 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474489 |
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| Protein GI | 157375889 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
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| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0304755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.110761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGTTA ACCCTGAGTT TTTCCCCTTA ACACAAATAG CGACTCGTTT CGTCGATCAG
CTTGCGCAGT GTCGTCGGCT GAATTTGACT GTACATGAAG CGAGTGAGCA CCATGTATTG
ATAGAGCTGC CCTATAGCAG TGAATTGATT GGTTATCCCG ATACCGGCGT TATCCATGGT
GGTGTGATCA CTACCTTGAT GGATACGGCG AGTGGCAGTG CTGTAGTCTG TTCTATCTAT
GATCACTATC ATAGTTTAGA GCTATCACCG ACTCTGGATT TGCGTGTCGA TTACATGAAA
CCGGCACAGC CCAATAAGCC TGTCTATGGG TTTGCCGAGT GCTATAAAAT ATCGTCGAGC
GTGGCCTTTA CACGCGCTAT CGCGTACCAA GATTCAATCG ATGATCCGAT TGCTCATGCC
GTCGGTTCAT TTATGCGGAT AAGCCCTGAG ATGATTGGCG ATAATTTTCG TCAGGCGTTG
CTGGGCAAGG CAATTGAGCA GCCTAGGAAT GTTTCGCTCT CGACTGAGTG CCAAAGCCAG
AACCAAACAC ACACTCCCGA ACGTTCAGCC TTGTTGGACG TAAAAGAGAT AGTTAAACAG
GCCACCGAGC TCAATGACTT CAGTCACCTG TTAGCGCATG TCCCCTATAC CAACTTTATC
GGTATGGCTG TCGAGCGTTT CGGTGACGAG TTGGTATTCA GGTTACCCGC GAAGGATGAC
AATATCGGTA ATCCGACCCT GCCTGCTATT CATGGTGGCG TGATTGCCGG ATTTATGGAG
ATGTCAGCCA TCGTTCAATT GATGGTGTTT ATGAACACCT CAAAAGTCCC TAAGGTTGTT
GATTTTTCAA TCGATTATTT AAGGGCTGGT TACCATAAAG ATACATTCGC CGAATGTAAG
ATCACGCGAC AGGGTCGCAG GGTGGCTAAT GTTAGTATCG ATTGTTGGCA GACAAGCAGG
AAGAAGCTTA TCGCCACGGC GCGGGCACAC TTCTTGATTG ATTAA
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| Protein sequence | MKVNPEFFPL TQIATRFVDQ LAQCRRLNLT VHEASEHHVL IELPYSSELI GYPDTGVIHG
GVITTLMDTA SGSAVVCSIY DHYHSLELSP TLDLRVDYMK PAQPNKPVYG FAECYKISSS
VAFTRAIAYQ DSIDDPIAHA VGSFMRISPE MIGDNFRQAL LGKAIEQPRN VSLSTECQSQ
NQTHTPERSA LLDVKEIVKQ ATELNDFSHL LAHVPYTNFI GMAVERFGDE LVFRLPAKDD
NIGNPTLPAI HGGVIAGFME MSAIVQLMVF MNTSKVPKVV DFSIDYLRAG YHKDTFAECK
ITRQGRRVAN VSIDCWQTSR KKLIATARAH FLID
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