| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2748 |
|---|
| Symbol | |
|---|
| ID | 5613950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3316393 |
|---|
| End bp | 3316989 |
|---|
| Gene Length | 597 bp |
|---|
| Protein Length | 198 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933667 |
|---|
| Product | DoxX family protein |
|---|
| Protein accession | YP_001474483 |
|---|
| Protein GI | 157375883 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2259] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.505798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTCG TTAAACTATA TCAAAAATTT GTAGGGTTAC TTCAATACGT TGAAGGTCTG
GCTCCTTTGG CGCTCAGACT CTATCTTGCG CCAGTGTTGA TGCAGGCTGG ATACAACAAG
TTATCGCATT TTAGTGATAC TGCCGCCTGG TTTGGTAATC CTGATTGGGG GCTTGGCCTG
CCTATGCCTG AGGTGATGGT GGGACTCGCT GCCGGCACCG AATTTTTCGG TGGAATACTC
CTGATCCTGG GATTAGCCAC ACGCCTGATC TCTATTCCTT TAATGGTCAC TATGTTAGTC
GCCGCATTTT CGGTTCACTG GGAGAACGGT TGGTTGGCCA TCGCTGATGT TAACTCCTGG
CTTGCCAACG AGCAGGTTCT CGCTGCGGGA GATAAATTGG CTAAAGCCAA AGAGCTGTTA
CAGGAAAATG GTAATTATGA GTGGCTGACG AGCTCGGGGA ATTTCGTGGT GTTAAATAAC
GGAATTGAGT TTGCTATTAC CTATCTCATC ATGTTGATGG CGCTGCTCTT TATGGGCGGA
GGACGTTACA CCAGCCTGGA TTATTTTGTC GACAGGTATT TTAATAAGAG AAATTAA
|
|---|
| Protein sequence | MPLVKLYQKF VGLLQYVEGL APLALRLYLA PVLMQAGYNK LSHFSDTAAW FGNPDWGLGL
PMPEVMVGLA AGTEFFGGIL LILGLATRLI SIPLMVTMLV AAFSVHWENG WLAIADVNSW
LANEQVLAAG DKLAKAKELL QENGNYEWLT SSGNFVVLNN GIEFAITYLI MLMALLFMGG
GRYTSLDYFV DRYFNKRN
|
|---|
| |