| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2746 |
|---|
| Symbol | |
|---|
| ID | 5611139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3314888 |
|---|
| End bp | 3315622 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933665 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001474481 |
|---|
| Protein GI | 157375881 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0426] Uncharacterized flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.512099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGTC AGCTTATCGT TGAAACACCC ACTCATAAAT GGATCTACTT TGGCCGGGAT
CCGGAAAAGT CGGAAAAAAT CATAGATACA AATCAGTATA TGCTAGTCAC TGACAAGAAA
GCCCTGTTGA TGGATCCTGG AGGGGTCGAG TTATTTGCCC CCATGTTAGC CAATATCGTT
AAACATATTC CGCTCGAGCA GCTCACCCAC CTCTTTGCTT CCCATCAGGA CCCTGACATC
ATCTCATCCC TCGGGCTCTG GGATCAGACT CTACCCAACG CAAAGCTCTA TTCTCCTTGG
CTTTGGGAGA GTTTTATCAG ACATTTTGGC ATGAGTAATA TCAGTTATGA ACCGATACCC
GATGAAGGAA GTCGTTTAGC GTTGGATCAA GTTGAAATAC ATTTTATCCC CGCACACTAT
CTGCACTCCT CCGGAAATAT GCATGTATAT GATCCTGCCG CCAGAGTCTT GATGTGTGGT
GACGTTGGTG CCGCACTGGA AGCTCACGAT GTCGATATCT TCGTCGATGA CTTCGAGGCC
CATACCAAGA AGATGAAATT CTTCCATCAA CGCTGGATGC CCTCAAACCG TGCAAAAAAT
GAGTGGATAG AGAGAGTCAG AAAGCTCGAC ATTGAGTTTA TGTGCCCTCA GCATGGGCGC
ATATTCAGAG GGGAGCAGGT CACTCAATTT CTGGATTGGT TTGAACAACT GGATGTAGGG
AAAGCGGGCT CTTAA
|
|---|
| Protein sequence | MKSQLIVETP THKWIYFGRD PEKSEKIIDT NQYMLVTDKK ALLMDPGGVE LFAPMLANIV
KHIPLEQLTH LFASHQDPDI ISSLGLWDQT LPNAKLYSPW LWESFIRHFG MSNISYEPIP
DEGSRLALDQ VEIHFIPAHY LHSSGNMHVY DPAARVLMCG DVGAALEAHD VDIFVDDFEA
HTKKMKFFHQ RWMPSNRAKN EWIERVRKLD IEFMCPQHGR IFRGEQVTQF LDWFEQLDVG
KAGS
|
|---|
| |