| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2736 |
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| Symbol | |
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| ID | 5610324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3305833 |
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| End bp | 3307089 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640933655 |
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| Product | ABC transporter permease protein |
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| Protein accession | YP_001474471 |
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| Protein GI | 157375871 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.176846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG TCAATGAGAG CAGAGTCTAT ATCGAGGGTA TCAAGCAAGC CTTCGATGAG
ATGCGTCACC ATAAGCTTCG CACCGCACTA ACTTTGCTGG GTATGATCTT CGGGGTCGGC
GCCGTGATTG CCATGTTGAG TGTCGGTGAA GGTGCCGAGC GTGAGGCCCT TAAGATGATC
GAATCTATGG GGGTCAGAAA CCTGGTTGTT AACGCCAGAC TCGCCGATGG CGAGGCGCTG
AAATCGATTC GTGAGCACAG TATTGGCCTT AGCTTAAGAG ATGTAGAAAG CGCTAAGGAT
ACTCTGCCAT TTGTTGAAAG CTGGAGTGCC CAGAAGCAGG TAAAAACCTT CAGCCTGTTT
AGTCTCGAGG GGCGCAGTGA CGCACAAGTC AAAGGTGTGA CCCCGAGTTA CTTCTCGCTC
AGTGCACTGA AACTCAGCGG TGGGAAAGCC TTCGATAGTA CCGATGAGAG CCATTATCGA
CAAGTTGCTG TGCTCGGGCC TGAAGCGGCG AGAAGCCTGT TTCCTCAGGG GCAAGCTATC
GGCAGTGTGA TCAAGATAAA TCATCAGTGG TTTACCGTGG TTGGCGTGTT AACCGACGCC
GAGAGTGGCA AGTCAAAGAT ACAGGGGGTG AAGCTGGGCG GTGAACGTAA CCAGGTCTTT
ATTCCATTGG CGACGGCGCT GAAGAAGATG AACTTTAAGT CACTGGAAGA TGAGTTGGAC
TCGTTTAAGG TTTCAATTAC TGAAAATGTG GATCCGTCAC TTGCAGCTAA GAGTCTGCGC
CACCTGATTA ATCGCCGCCA CGGCGGTGAA AAAGACTATG ACATTGTGGT GCCGGCGGAT
CTGTTGGCGC AGCATCAGAA GACTCAGCAG ATCTTCAATA TCGTTATGGC CTGTGTCGCC
GGGATCTCCT TGCTGGTTGG CGGCATAGGG ATCATGAATA TCATGTTAGC TACCATCATG
GAGCGCACGG GCGAAATTGG TTTGTTGCGG GCTCTGGGAG CGAGGCGTAA AGATATTGCC
CGTCAGTTCT TAATCGAGAG CATCGCGATC TCGGCGACGG GAGGCATCAT TGGCATAGGT
GTCGGTTTGC TGCTTGCCGT GGTGATATCG GCGGCTGCCG GTTGGCCTGT AGCCTGGTCA
CCCTTTGCCA TCATTCTTGC GCTCGGTGTC TGCATGACAA TCGGTGTCGG TTTTGGTCTG
TATCCTGCCA AGAAAGCCGC CAGATTAGAC CCGATTGTCG CCCTGCAACG AGATTAA
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| Protein sequence | MSIVNESRVY IEGIKQAFDE MRHHKLRTAL TLLGMIFGVG AVIAMLSVGE GAEREALKMI
ESMGVRNLVV NARLADGEAL KSIREHSIGL SLRDVESAKD TLPFVESWSA QKQVKTFSLF
SLEGRSDAQV KGVTPSYFSL SALKLSGGKA FDSTDESHYR QVAVLGPEAA RSLFPQGQAI
GSVIKINHQW FTVVGVLTDA ESGKSKIQGV KLGGERNQVF IPLATALKKM NFKSLEDELD
SFKVSITENV DPSLAAKSLR HLINRRHGGE KDYDIVVPAD LLAQHQKTQQ IFNIVMACVA
GISLLVGGIG IMNIMLATIM ERTGEIGLLR ALGARRKDIA RQFLIESIAI SATGGIIGIG
VGLLLAVVIS AAAGWPVAWS PFAIILALGV CMTIGVGFGL YPAKKAARLD PIVALQRD
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