| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2731 |
|---|
| Symbol | |
|---|
| ID | 5613810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3298578 |
|---|
| End bp | 3300101 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933650 |
|---|
| Product | putative flavoprotein subunit of a reductase |
|---|
| Protein accession | YP_001474466 |
|---|
| Protein GI | 157375866 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.620849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAAC GCACTAGATT TATGACATTT ACCCTTGCCA TGCTCATGTC CACCCTATCG
GCCGGCACTT ATGCTACTGA AAAAACAATC ACCACGGATG TTGTTGTAGT TGGTGGTGGC
TCGACCGGAC TCACTGCTGC GTTAACTGCA GCTGAAGGTG GAGCCAAGGT AATCGTGCTA
GAAAAAAACC CTTACCTGGG TGGGTCCTCA AATTTTGCCG AAGGGCTTTT TGCCGTTGAG
TCTGAATATC AGCGTGCAGC ATCTTATGGC TTAACCAAAG ATGAGGCCTT CAAACATATT
ATTGAGTTTA ATCATAATAA AATTGATAAC ACCATCATCC GAAATTATGT CAACAAAGCA
GCCGATAATA TCGACTGGTT AAATGAGCAA GGTGTGGACT TCAGGCTTAT TCAAATCTCC
CCAGAAGAAC CCAGAGTCTG GCATATCATC GAAGATAAAA AACCTTACAT TCATGGTGGA
GCCCTGATCA CAACACTTCA ACAGAAAGCG AAAAAATTAG GAGTTCAATT TTTACTAAGA
ACTCCGGCAA AAAAACTGAT TTACAGTAAT AACAGAGTCA CTGGAGTTGA GGCGGTAGAC
CATAAGGGCA ACAAGATTGT CTTGAAGGCC AAGGCCGTTG TTATTGCAAC AGGTGGTTTT
GGAAACAGCA AAGAGAAAAT TGCCAAGTGG ACTAACTATA ATCCTGAGAC ATTTTTACCC
GCGCTGCCGT TAAATAAGAC TGGCGACGGC ATACAGATGG CAAAAGATGT TGGTGCTAAA
ACTGAAGGGG AAGGCCTTAT GGTATACCTC GGAGCCAGAG GCACTGGAAT TATCCCTATG
CAGGGCATAA ATGCCATGAC ATGGCAGCCC ACTAATCTAT GGGTAAATAG CTCTGGCGAA
CGTTTCACCA ATGAGGCCGT AGCCTTCTCT TTTGGACAGG CCGCGAACTC AGTTGGCCGA
CAACATGGCA ACATGGCTTG GGCCATTTTT GATGATGCCA GCGTCGACTA TGCTGCACAG
AAAGGAATTG ACCAAGGTAT AGGTGTGATT ATCCCAACGA CAACGAAATT GACGGGACTT
CGCGATGAAA TCAATAACGC GCTTGCAGTG AACAGTGATG GAGTTAAAAC AGCCGAATCA
ATCGAAGCAC TTGCGAAACA AATTGATGTA CCAATGGATA CACTTATAAA AAGTTACCAC
GACTACAATG CCTATAGTAA AAATGGCTAT GACCCTCAGT TTGTTAAAGA TCACAAATGG
CTTAGACCCC TTAATCATGG AAATCTCTAC GCTATCAAAA TGATGCCTAA TCATTTTGCC
TCAATCGGCG GACTCAATAT CAACACTAAG ATGCAAGTGT TGGGACACGA TAATCAACCC
ATTTCCGGAC TCTATGCCGG TGGGCTTGAG GTTGGTGGCC TGTATGGTGA CACCTATACC
CTTTGGGCTT CGGGACATGC TTATGGATTC TCCATTCATT CGGGACGTAC CGCAGGTGCC
AGCATACTGA AAGCCATTAA ATAG
|
|---|
| Protein sequence | MKKRTRFMTF TLAMLMSTLS AGTYATEKTI TTDVVVVGGG STGLTAALTA AEGGAKVIVL
EKNPYLGGSS NFAEGLFAVE SEYQRAASYG LTKDEAFKHI IEFNHNKIDN TIIRNYVNKA
ADNIDWLNEQ GVDFRLIQIS PEEPRVWHII EDKKPYIHGG ALITTLQQKA KKLGVQFLLR
TPAKKLIYSN NRVTGVEAVD HKGNKIVLKA KAVVIATGGF GNSKEKIAKW TNYNPETFLP
ALPLNKTGDG IQMAKDVGAK TEGEGLMVYL GARGTGIIPM QGINAMTWQP TNLWVNSSGE
RFTNEAVAFS FGQAANSVGR QHGNMAWAIF DDASVDYAAQ KGIDQGIGVI IPTTTKLTGL
RDEINNALAV NSDGVKTAES IEALAKQIDV PMDTLIKSYH DYNAYSKNGY DPQFVKDHKW
LRPLNHGNLY AIKMMPNHFA SIGGLNINTK MQVLGHDNQP ISGLYAGGLE VGGLYGDTYT
LWASGHAYGF SIHSGRTAGA SILKAIK
|
|---|
| |