| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2724 |
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| Symbol | |
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| ID | 5614104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3290273 |
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| End bp | 3290950 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933643 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_001474459 |
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| Protein GI | 157375859 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.497191 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTGCT ACATTGAACT ACAAAATATT AGTCAGTCTT TTCAGGCTAC TCAATCAAAA
GTAACCTTGT TTAACAATCT AAATTTGCGA GTCGAGCAAG GTAAGTCTTA TGCGATTACG
GGACCTTCCG GAGCTGGTAA ATCAAGTTTA TTAATGTTGA TGTCTGGTTT AGAGCAGCCA
ACTTCAGGCC AGGGAATCTA TTCAAAAAAT GGCCAAAGCC ATTCATTAGC CTATTTAAAA
ACAGACATTG GCTTTATTTT TCAACAGTTT CATCTGTTGC CGGAGCTCAC CGCACTAAAT
AATGTGGCAT TGCCGTTAAA GCTGCGAGGT GATAAGCGGG CTATGAATAA GGCAAAGATA
TGGCTGGAAA AGGTTGGTTT ACAACACAGA GAAAATCATA AGCCAAGTGA ATTAAGTGGG
GGTGAGCAAC AACGTGTGGC GATAGCGCGG GCGCTCGTTT TCGAGCCAAA TTTTATTTTT
GCCGATGAAC CAACAGGGAA TCTGGATAAA GATAGCGCGG CCAGTATTGC CGATATTTTG
TTTGATTGCT GCCGGGAAAA TAACGCTGGG CTGGTTATTG TTACCCACAG TGACGCGCTG
GCCAATCGTG CTCAACAGGT ATTCTCATTA GCCGATGGCC AACTTAATAA CCCGCTGGCA
AATGTTGAGG TGGCATAA
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| Protein sequence | MSCYIELQNI SQSFQATQSK VTLFNNLNLR VEQGKSYAIT GPSGAGKSSL LMLMSGLEQP
TSGQGIYSKN GQSHSLAYLK TDIGFIFQQF HLLPELTALN NVALPLKLRG DKRAMNKAKI
WLEKVGLQHR ENHKPSELSG GEQQRVAIAR ALVFEPNFIF ADEPTGNLDK DSAASIADIL
FDCCRENNAG LVIVTHSDAL ANRAQQVFSL ADGQLNNPLA NVEVA
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