Gene Ssed_2700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2700 
Symbol 
ID5611766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3265413 
End bp3265733 
Gene Length321 bp 
Protein Length106 aa 
Translation table11 
GC content47% 
IMG OID640933619 
Producthypothetical protein 
Protein accessionYP_001474435 
Protein GI157375835 
COG category[S] Function unknown 
COG ID[COG3784] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTA AATTACTGGT GCTCGCCGCA GGTCTGCTGC TGAGCCTTAA TGCGTTTGCT 
ATCTCCCTTC AAGACGCAAA GTCTCAGGGG CTCGTTGGCG AACAGCCTAA TGGTTACCTT
GGCGTAGTAA AGAGTAACCC GGAATCTAAT TCCGTCGCTA AGCAGGTCAA CGCTAAGCGC
AAAACCCACT ATCAGAAGAT CGCCCGAAAA AATGGTATCT CAGTGGATGA TGTAGCCAAA
CTGGCCGCCG AAAAAGCGAT GAAAGCGACC AAGAAAGGTC AGTACATCAA AAATTCGAGT
GGTAAATGGG TAAAAAAGTA A
 
Protein sequence
MKTKLLVLAA GLLLSLNAFA ISLQDAKSQG LVGEQPNGYL GVVKSNPESN SVAKQVNAKR 
KTHYQKIARK NGISVDDVAK LAAEKAMKAT KKGQYIKNSS GKWVKK