| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2687 |
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| Symbol | |
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| ID | 5611834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3243301 |
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| End bp | 3244341 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933606 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_001474422 |
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| Protein GI | 157375822 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.686037 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGCG AACAAAATCC ACTGGGTTTA TTGGGCATAG AATTTACAGA ATTTGCCACC
CCAGATCTTG ATTTCATGCA TCAAGTGTTT ATTGATTTCG GTTTTTCTAA GCTAAAGAAA
AGTAAAACTA AAGACATTAG CTACTACAAG CAGAACGACA TTAACTTTTT GCTGAACAAT
GAAGTTCGCG GCTTTTCGGC AGAGTTCGCT AAGAGTCACG GCCCCGCGAT CTGTTCGATG
GGCTGGCGTG TAGAAGATGC CCAGTTTGCT TTCGAAGGCG CAGTGGCACG CGGTGCTAAA
CCTGCAACAG AAGAAAATAA AGACCATCCT TACCCCGCCA TTTACGGTAT TGGCGACAGC
CTGATCTACT TTATCGACCT GTTCGGCAGT GAAAGTAATA TCTACCAGAA TGATTTCGTC
GATCTTGAAG AGCCTGTGAT CACTCAGGAG AAAGGCTTTA TCGAAGTCGA TCACCTGACC
AACAATGTTT ACAAAGGGAC GATGGAACAT TGGGCCAACT TCTACAAAGA TATCTTTGGT
TTCACCGAAG TGCGCTACTT CGATATTAAA GGGGCCCAAA CGGCCTTAAT CTCTTATGCG
CTACGTTCAC CCGACGGCAG CTTCTGTATC CCGATTAATG AAGGCAAAGG CAGTGACAAG
AATCAGATCG ATGAATACCT CAGAGAGTAT GATGGACCCG GCGTTCAACA CCTGGCATTC
AGAAGCCGGG ATATCGTCGC GTCACTAGAT GCGATGGAAG GTTCATCGAT AAAAACTTTA
GATATCATCC CCGAGTATTA CGACACCATC TTCGAAAAAT TGCCACAGGT GACAGAAGAC
AGAGAAAAAA TTAAACATCA TCAGATCTTA GTCGATGGCG ACGAAGAGGG TTACCTGTTA
CAGATCTTCA CTAAGAACCT GTTCGGCCCC ATCTTTATCG AGATCATTCA GCGCAAGAAT
AACCTGGGAT TCGGAGAGGG TAACTTTACC GCCCTGTTCC AGTCTATCGA ACGGGATCAA
CAGCGCCGCG GTGTGCTGTA A
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| Protein sequence | MASEQNPLGL LGIEFTEFAT PDLDFMHQVF IDFGFSKLKK SKTKDISYYK QNDINFLLNN
EVRGFSAEFA KSHGPAICSM GWRVEDAQFA FEGAVARGAK PATEENKDHP YPAIYGIGDS
LIYFIDLFGS ESNIYQNDFV DLEEPVITQE KGFIEVDHLT NNVYKGTMEH WANFYKDIFG
FTEVRYFDIK GAQTALISYA LRSPDGSFCI PINEGKGSDK NQIDEYLREY DGPGVQHLAF
RSRDIVASLD AMEGSSIKTL DIIPEYYDTI FEKLPQVTED REKIKHHQIL VDGDEEGYLL
QIFTKNLFGP IFIEIIQRKN NLGFGEGNFT ALFQSIERDQ QRRGVL
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