| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2684 |
|---|
| Symbol | |
|---|
| ID | 5612132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3240316 |
|---|
| End bp | 3241308 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933603 |
|---|
| Product | cytochrome-c peroxidase |
|---|
| Protein accession | YP_001474419 |
|---|
| Protein GI | 157375819 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1858] Cytochrome c peroxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.831831 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTAT TATCTCCCCT TTCTCTTGCA ATCCTGGCTG CAATGAGCGC AGCACCTGCC
GCAGCAAAAG AGCCAATTGA AATTATCCAA CCAGCAAAGA TCACGGCACC AGAAAAAGTT
GAATTGGGAA AGATGTTGTT CTTCGAGCCA AGGCTCTCAA TGTCTGGTTT TATCTCCTGT
AACTCATGCC ATAACCTATC GCTTGGCGGT GTCGATGCAC TTCCAACCTC TATTGGACAC
AACTGGCAAG AGGGCCCGAT TAACTCTCCT ACGGTCCTGA ATGCTGAATA CGGTCTGGCA
CAATTTTGGG ACGGGCGTGC AAAAGATCTC AAAGAACAAG CCGGTGGGCC AATCGCTAAT
CCTGGAGAGA TGGGTTATAC CCATGAGCTT GCCGTCTCAA CTGTAAACTC CATGCCAGCC
TACCAGACAA AGTTTGAAGC CATTTATGGT AAGAACTCGG TCAACATTGA CAATATTACC
GATGCCATCG CCGAGTTTGA AAAAACACTG GTTACGCCGA ACAGTTCTTT CGATCTCTAT
CTTCAAGGAG AGCAGGACGC GATCACCGCC GAAGCAAAAT CAGGTTATCA GCTCTTTAAA
AATAAAGGTT GTACCAGCTG TCACAATGGA CCCGCGGTTG GTGGCACCAT GTATATGAAG
ATGGGACTAG TGAAACCGTT CCACACTAAA AACCCGGCAG AGGGTCGCAT CGCTGTAACT
GGAAAAGAGG CCGATAAATA TGTCTTTAAA GTTCCGACAC TGCGCAATAT CGAACTAACC
TACCCTTACT TTCACGATGG TGCGACCTGG ACCTTAGAGG AAGCGGTCAA CACGATGGCT
GATATTCAGC TTGGTCAGCA ATTATCTGAG AAAGAGACAG TTGAGATGGT GGCATTTCTT
AAGTCGCTCA CCGGAGAGCA GCCACAGATA GTGTTACCTA TCCTGCCACC ATCGAATGCG
AATACACCTA AGCCCGTCCC TTTTGAAAAA TAG
|
|---|
| Protein sequence | MKLLSPLSLA ILAAMSAAPA AAKEPIEIIQ PAKITAPEKV ELGKMLFFEP RLSMSGFISC
NSCHNLSLGG VDALPTSIGH NWQEGPINSP TVLNAEYGLA QFWDGRAKDL KEQAGGPIAN
PGEMGYTHEL AVSTVNSMPA YQTKFEAIYG KNSVNIDNIT DAIAEFEKTL VTPNSSFDLY
LQGEQDAITA EAKSGYQLFK NKGCTSCHNG PAVGGTMYMK MGLVKPFHTK NPAEGRIAVT
GKEADKYVFK VPTLRNIELT YPYFHDGATW TLEEAVNTMA DIQLGQQLSE KETVEMVAFL
KSLTGEQPQI VLPILPPSNA NTPKPVPFEK
|
|---|
| |