| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2681 |
|---|
| Symbol | |
|---|
| ID | 5611857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3238446 |
|---|
| End bp | 3238853 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933600 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474416 |
|---|
| Protein GI | 157375816 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3304] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.95193 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.733231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTAT TACGTTTAAT CTTTAACATT GCATGGTTTG TTCTCGGCGG ATTTGTTATG
GGGTTAGCCT GGTGGATCGC AGGCTTACTC TGTTATATCA GTATTATCGG CATTCCATTT
GGGCGAGCCT GTTTTGTCAT CGGTGAAATG ACCTTCTGGC CATTCGGGCA AGATCATATG
AGTAGAAGCA GCCTGACAGG CAGTGAGGAT ATAGGTACAG GTGCATTTGG TACCGTTGGC
AATATCGTCT GGTTTTTACT ATTTGGGATC TGGCTTGCAA TAGGTCACAT TACTCACGCG
TTGGCATGTT TCGTTACCAT TATCGGGATA CCTTTTGGTA TTCAGCACCT GAAATTAGCA
ATTTTAAGCT TAACCCCTAT TGGGCAGACT GTTGTCACTA AGGCATAA
|
|---|
| Protein sequence | MAVLRLIFNI AWFVLGGFVM GLAWWIAGLL CYISIIGIPF GRACFVIGEM TFWPFGQDHM
SRSSLTGSED IGTGAFGTVG NIVWFLLFGI WLAIGHITHA LACFVTIIGI PFGIQHLKLA
ILSLTPIGQT VVTKA
|
|---|
| |