Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2677 |
Symbol | |
ID | 5612242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3234190 |
End bp | 3234855 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640933596 |
Product | hypothetical protein |
Protein accession | YP_001474412 |
Protein GI | 157375812 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0618791 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.239313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTCCC TATCTCTTGT CGATATACCA TTCGATTATC GCCATACCTG TTGGTTTTGC GCTGAGCCCT GTAACTGTAC CTTTGAATAC CACGCCACGG CGAGTACTCC ACATCAGAGT CTGAGCATCC CTGCCTGTAA AGAGTGCTTA AAACTGGCTA AGCTGAATCA ACTCACTTCA ATTTGGGACT GTCAGGTCGC GGTGAAAGAT GAGCTTATGC GGATCTACGC TAAACACCTG GCGATCGGTA TCAATTGGAC AGAGCAAGAG CTCATCGACT CTGAGTTCTC CTGTAAAGTA TTCGAAGGAT TCAAGAAGAG TGCTTGGATG ATGTACCTGA TCGCCAAAGA AAGAGTCAAT GCACCGGGTT GGCCATTGAG CGTTAATGGT ATCCCGTTGG ACAACGGGGG CTATGAGATG GGCTTTGAGT TTGATGGAGT CAAATATCGC TCTCTTTCAA AAGCGGTGAG CCATTACAGT CGCATCTTAG GGTTAGATAA ACTGTTTTTT GAAGCCGTAC TGTCACAGGT GGGCAGAAGT CGATTTGGCT ATGCCGTTCG AATCAGCCGA ATTAATATCG CTTCCCATAA AAGGGTCAAG CAACAGGTGC TGAAAGATAT CGCTCTGGAG CAAGGGCAGC CACTGCAAAA TGACACTTGG TTTTAA
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Protein sequence | MPSLSLVDIP FDYRHTCWFC AEPCNCTFEY HATASTPHQS LSIPACKECL KLAKLNQLTS IWDCQVAVKD ELMRIYAKHL AIGINWTEQE LIDSEFSCKV FEGFKKSAWM MYLIAKERVN APGWPLSVNG IPLDNGGYEM GFEFDGVKYR SLSKAVSHYS RILGLDKLFF EAVLSQVGRS RFGYAVRISR INIASHKRVK QQVLKDIALE QGQPLQNDTW F
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