Gene Ssed_2677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2677 
Symbol 
ID5612242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3234190 
End bp3234855 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content47% 
IMG OID640933596 
Producthypothetical protein 
Protein accessionYP_001474412 
Protein GI157375812 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0618791 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.239313 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCCC TATCTCTTGT CGATATACCA TTCGATTATC GCCATACCTG TTGGTTTTGC 
GCTGAGCCCT GTAACTGTAC CTTTGAATAC CACGCCACGG CGAGTACTCC ACATCAGAGT
CTGAGCATCC CTGCCTGTAA AGAGTGCTTA AAACTGGCTA AGCTGAATCA ACTCACTTCA
ATTTGGGACT GTCAGGTCGC GGTGAAAGAT GAGCTTATGC GGATCTACGC TAAACACCTG
GCGATCGGTA TCAATTGGAC AGAGCAAGAG CTCATCGACT CTGAGTTCTC CTGTAAAGTA
TTCGAAGGAT TCAAGAAGAG TGCTTGGATG ATGTACCTGA TCGCCAAAGA AAGAGTCAAT
GCACCGGGTT GGCCATTGAG CGTTAATGGT ATCCCGTTGG ACAACGGGGG CTATGAGATG
GGCTTTGAGT TTGATGGAGT CAAATATCGC TCTCTTTCAA AAGCGGTGAG CCATTACAGT
CGCATCTTAG GGTTAGATAA ACTGTTTTTT GAAGCCGTAC TGTCACAGGT GGGCAGAAGT
CGATTTGGCT ATGCCGTTCG AATCAGCCGA ATTAATATCG CTTCCCATAA AAGGGTCAAG
CAACAGGTGC TGAAAGATAT CGCTCTGGAG CAAGGGCAGC CACTGCAAAA TGACACTTGG
TTTTAA
 
Protein sequence
MPSLSLVDIP FDYRHTCWFC AEPCNCTFEY HATASTPHQS LSIPACKECL KLAKLNQLTS 
IWDCQVAVKD ELMRIYAKHL AIGINWTEQE LIDSEFSCKV FEGFKKSAWM MYLIAKERVN
APGWPLSVNG IPLDNGGYEM GFEFDGVKYR SLSKAVSHYS RILGLDKLFF EAVLSQVGRS
RFGYAVRISR INIASHKRVK QQVLKDIALE QGQPLQNDTW F