| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2660 |
|---|
| Symbol | |
|---|
| ID | 5612396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3216929 |
|---|
| End bp | 3217909 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933579 |
|---|
| Product | rhodanese domain-containing protein |
|---|
| Protein accession | YP_001474395 |
|---|
| Protein GI | 157375795 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1054] Predicted sulfurtransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.918905 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0411957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCAAG TTGTTGTGTG CGCGCTTTAT AAATTTGTTT CTCTGCCCCA TTTTGAATCG
ATACAGAAAC CGCTATTGGC GTTGATGGAA GAGTCAGGCG TTAAAGGGAC CTTACTGTTG
GCAAGTGAAG GGATCAATGG CACGGTTGCC GGAAGCCAAG CCGCCATCGA TAGCTTATTG
ATGTGGCTCT ATCAGCAACC CGGGCTCGAT AATATAGTGC ATAAGCGCTC TTTCGATGAA
CAGATGCCTT TCTACCGCAC TAAGGTCAAA CTTAAAAAAG AGATTGTCAC TATGGGGGTC
GAGGGTATCG ACCCTCTGAA GGTCGTAGGT ACCTATGTTA AGCCGCGAGA CTGGAATAAA
TTAATCTCAG ATCCCGATGT ATTGCTGGTG GATACCCGTA ATGAATATGA GATCCAGATA
GGTACTTTCA AGAATGCCGT AGACCCTAAA ACCGATACCT TTCGTGAATT CCCAGCCTAT
GTCAAAGATA ATTTGGATCC CGCGAAGCAC AAAAAGGTGG CGATGTTCTG TACCGGTGGT
ATTCGTTGTG AGAAGTCTAC GGCCTACCTG AAAGAGCAAG GTTTCGATGA GGTATACCAT
CTTGAGGGGG GCGTGCTTAA ATATCTCGAA GAGGTTAAGC AGGAAGAGAG CCTATGGGAA
GGTGAGTGTT TCGTATTCGA TAATCGCGTT GCCGTAAATC ATAACCTGGA AAAAGGTCAG
TATGATCAAT GTAATGCTTG CCGTATGCCA ATAACTGAAA CTGAAAAAGC GAGCGAAGCC
TATGTTCAGG GGGTGAGTTG TCCCCACTGT ATCGATTCCA CTTCAGATAA ACAGCGTCGT
CGTTTTGAAG AGCGCGAGCG TCAGATGCTT CTGGCAGCTA AACGAGGTGA GGCGCATATT
GGCAGCGATG TCAGCCAAGT GATCTTATCG AGACGCACTG AGAAAGAGGA TCAGAGACAA
GCACAGAATA AAAAAGCTTA A
|
|---|
| Protein sequence | MSQVVVCALY KFVSLPHFES IQKPLLALME ESGVKGTLLL ASEGINGTVA GSQAAIDSLL
MWLYQQPGLD NIVHKRSFDE QMPFYRTKVK LKKEIVTMGV EGIDPLKVVG TYVKPRDWNK
LISDPDVLLV DTRNEYEIQI GTFKNAVDPK TDTFREFPAY VKDNLDPAKH KKVAMFCTGG
IRCEKSTAYL KEQGFDEVYH LEGGVLKYLE EVKQEESLWE GECFVFDNRV AVNHNLEKGQ
YDQCNACRMP ITETEKASEA YVQGVSCPHC IDSTSDKQRR RFEERERQML LAAKRGEAHI
GSDVSQVILS RRTEKEDQRQ AQNKKA
|
|---|
| |