| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2656 |
|---|
| Symbol | |
|---|
| ID | 5612623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3212276 |
|---|
| End bp | 3213655 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933575 |
|---|
| Product | putative chaperone |
|---|
| Protein accession | YP_001474391 |
|---|
| Protein GI | 157375791 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0443] Molecular chaperone |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.474812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.19318 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTTG GTTTTGATTA TGGTAGTGCG AATTGCGCCA TAGGGGTTAT GGAAGAGGAT
GACGTCAGAT TGCTGCCTTT GTCGGAGGGA TCAAACTATC TGGCCTCTAC TCTTTACGCG
TTAGACAGAG AGCTTATAGC CGAAGCGGTA TATCAGCAGA TGCCGACTCA CCTGAAAGCC
GATTATGCCA AAGCCCGTTC GGCTCAACTG AGCCGTGCTC GTCACGCAAG ACGCGAGTTA
GATTTAGATA GTGACGAACA GGCTGTTTTC GTCGGTGAAC AAGCCGTTAA GGCATACCTG
GATATGCCTG AGGATGGTTT CTATGTCCGT TCGCCAAAAT CATTCTTAGG GGCTACAGGT
TTAAGAGCCG ATCAGGTGGC CCTGTTTGAA GATATCGTCA CCATGATGAT GCAGCATATA
AAGCAGATTG CCGAGTCGAA ACAAGGCTTA GATAACAAAC ATGCAATCAC CCACGCCGTT
ATCGGCAGAC CCGTGAATTT TCAGGGGATC GGCGGTGAAG AGAGCAATAA ACAAGCTGAG
TCGATTCTTC GCCTGGCAGC AAAAAGAGCT GGCTTCGTCG ATGTCGATTT CCTGTTTGAA
CCATTGGCTG CGGGAATGGA CTTTGAGGCG AGCTTAAACG AGGACAAAGT GGTTCTGGTC
GTCGATGTCG GTGGCGGTAC TACAGATTGC TCAGTAGTCA AGATGGGACC ATCACATATT
ACTTCAACCG ACAGGACGGA TGACTTTCTC GGTCATAGCG GGCAAAGGGT CGGCGGGAAT
GACTTAGATA TTGCACTGTC TATGAAGGCC TTCATGTCTC ACTTAGGCTT AGGTTGTCAT
ATGGTCAACG GTCTGCCAGT ACCGAGTAAA CCTTTCTGGA ATGCCGTGGC CGTTAACGAT
ATCAGTGCTC AACGTGACTT TTCATCATTA AGCTCTCGCA AGATGATCGA GGAGTTGATT
AAAGATGCTA AGAAACCTGA GCTGTTAGAA AGGCTACTCA AGGTGCAGCA AGATCAGTTG
GGCTATCGAA TTGTGCGCAG TGCTGAGCAG GCTAAAATTA GCCTGTCGGA TAATGAGTCT
GTAACAATGG AGCTCGATTA TATCTGCTCT AAACTCAGCG CCGATGTGAG TCGGGCCTTG
TTCGCCGAGG CGGTTGCAGC GCCGAGTGCA AAAATCGAAG CCTTGATGCA AGAAGCGTTA
GCGACTGCCG GCGTTGAACC CGATGTGATC TACGTGACCG GTGGTACGGC AAGAAGCCCT
GCAATCTATA ACAAGATCGC AGGATTATAT CCCGCTATCC CTATCGTAGT AGGTGATCAT
TTTGGTAGTG TAACGGCAGG ATTAACGCGA TGGGCGCAAA AAGTATTTAA GGAAGGATGA
|
|---|
| Protein sequence | MFVGFDYGSA NCAIGVMEED DVRLLPLSEG SNYLASTLYA LDRELIAEAV YQQMPTHLKA
DYAKARSAQL SRARHARREL DLDSDEQAVF VGEQAVKAYL DMPEDGFYVR SPKSFLGATG
LRADQVALFE DIVTMMMQHI KQIAESKQGL DNKHAITHAV IGRPVNFQGI GGEESNKQAE
SILRLAAKRA GFVDVDFLFE PLAAGMDFEA SLNEDKVVLV VDVGGGTTDC SVVKMGPSHI
TSTDRTDDFL GHSGQRVGGN DLDIALSMKA FMSHLGLGCH MVNGLPVPSK PFWNAVAVND
ISAQRDFSSL SSRKMIEELI KDAKKPELLE RLLKVQQDQL GYRIVRSAEQ AKISLSDNES
VTMELDYICS KLSADVSRAL FAEAVAAPSA KIEALMQEAL ATAGVEPDVI YVTGGTARSP
AIYNKIAGLY PAIPIVVGDH FGSVTAGLTR WAQKVFKEG
|
|---|
| |