| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2648 |
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| Symbol | tmk |
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| ID | 5612681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3203062 |
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| End bp | 3203694 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640933567 |
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| Product | thymidylate kinase |
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| Protein accession | YP_001474383 |
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| Protein GI | 157375783 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0125] Thymidylate kinase |
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| TIGRFAM ID | [TIGR00041] thymidylate kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.106877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAGCG AAAAAACCAG TAAATTTATT GTGATCGAGG GGTTGGAAGG CGCAGGCAAA
TCCAGTGCGA TATCCCTTGT TCGGGACTTT ATCGAGAAGC ATACAGGTAC AGCCCCCGTT
TGTACCCGTG AACCCGGCGG TACGCCATTG GCTGAACGTA TGAGGGATCT GGTTAAAATC
GCCGATGAGA GTGATCCTCT CTGTGACGAG GCCGAGTGTC TTCTCCTTTA CGCGGCAAGA
GCCCAGTTAG TCGCCAACGT GATTAAGCCC GCCCTAACTC GTGGAGAGTG GGTGCTTGGG
GACAGGCATA ACCTTTCATC CCTGGCCTAT CAAGGGGGAG GGCGGGGCTT GATGGATTTA
GTCGAGGTCG TGAGTCACGC CACGCTGGGA GAGTTTAAGC CTGATTTAAC TATCTATCTG
GATATCGACC CTGAATTGGG TCTGAGTCGC GCCGCAAGTC GGGGTGAGTT AGATAGAATA
GAGAAGCAAG AGCTGGCTTT TTTTGAGCGC GCCCGTGGGA CTTTTCTCTC CTTCGCATCG
AAAGATGATT CCATCGCCGT TATCGATGCA GGCCAAACGA TGGCTGAAGT ACATAAAGAT
ATTCTTGCGT TATTACAATC AATGGAGTGG TAA
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| Protein sequence | MNSEKTSKFI VIEGLEGAGK SSAISLVRDF IEKHTGTAPV CTREPGGTPL AERMRDLVKI
ADESDPLCDE AECLLLYAAR AQLVANVIKP ALTRGEWVLG DRHNLSSLAY QGGGRGLMDL
VEVVSHATLG EFKPDLTIYL DIDPELGLSR AASRGELDRI EKQELAFFER ARGTFLSFAS
KDDSIAVIDA GQTMAEVHKD ILALLQSMEW
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