| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2645 |
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| Symbol | |
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| ID | 5612755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3200913 |
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| End bp | 3201701 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933564 |
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| Product | TatD family hydrolase |
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| Protein accession | YP_001474380 |
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| Protein GI | 157375780 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.124762 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGCTCATCG ATTCTCATTG TCATCTTGAC CGTTTAAAAG CGGCACCCGA TCATCAAACT
CTTCAACATA TCCTCAAAGA AGCTAAAAGC AGAGGGGTTG ATTACTTCCT CTGTGTTAAT
GTTCGTCAAA ATGGCTTCGA GTCTATGCGC GATAAGATGG CTGAGTTTGA TCAGGTGTTT
CTTTCGGCAG GTGTTCACCC TCTGGATGTT CAAGAGGGGT TAGATGCCGT TCAGCTACAG
GAGTTTGTAA AAGAGCCAAA GGTGATTGCC ATAGGTGAGA CCGGCTTGGA TTATTTTTAT
GCCAATGAAA CAAAGGCCTT ACAGCAGACT TGCTTCGAGC AGCAGATCGA GCTGGCGGTT
CAGGTCAATA AGCCTTTGAT CATTCATACT CGTGACGCGC GTGAAGATAC GCTTAATTTT
TTGAAAAATG GACACGGTGA CAAGGTCGGT GGTGTCTTGC ACTGCTTTAC CGAAAACTGG
GAGATGGCTA AGGCTGCTAT CGATTTAGGC TTTTATATTT CGGTTTCGGG TATTGCGACC
TTTAAAAATG CGGGTGAGTT GAGAACCGTC ATTCGTAAGG TGCCTAAAGA CAGGTTACTT
GTCGAGACCG ATGCCCCCTA TTTAGCCCCG GTTCCTCATC GCGGTAAAGA GAATCAACCC
GCTTTCGTCA GGGATGTGGC CGAGTATATC GCTCAGTTAC GTGGCGAGAG CTTCGAGGAG
TTGGCTCAAT ACACCACAGA TAACTTCTTT AATCTGTTTA CCGATGCAGC CAAACTTGCT
GGTCGCTGA
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| Protein sequence | MLIDSHCHLD RLKAAPDHQT LQHILKEAKS RGVDYFLCVN VRQNGFESMR DKMAEFDQVF
LSAGVHPLDV QEGLDAVQLQ EFVKEPKVIA IGETGLDYFY ANETKALQQT CFEQQIELAV
QVNKPLIIHT RDAREDTLNF LKNGHGDKVG GVLHCFTENW EMAKAAIDLG FYISVSGIAT
FKNAGELRTV IRKVPKDRLL VETDAPYLAP VPHRGKENQP AFVRDVAEYI AQLRGESFEE
LAQYTTDNFF NLFTDAAKLA GR
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