| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2638 |
|---|
| Symbol | rbgA |
|---|
| ID | 5613095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3193154 |
|---|
| End bp | 3194092 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933557 |
|---|
| Product | ribosomal biogenesis GTPase |
|---|
| Protein accession | YP_001474373 |
|---|
| Protein GI | 157375773 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1161] Predicted GTPases |
|---|
| TIGRFAM ID | [TIGR03596] ribosome biogenesis GTP-binding protein YlqF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00454653 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.052608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTC AGTGGTACCC GGGACATATG CACAAGGCAC GTAAAGAGAT TGAAGAGGTC
ATGCCTCAGG TCGATCTGGT TATTGAAGTG CTCGACGCAA GGATCCCATA TAGTAGTGAA
AACCCTGTGG TTTCAACACT GCGTGGTGAT AAGCCCTGTA TTAAGCTGCT CAATAAATCT
GATTTGGCAG ATCCTGAAAC CACCCAACGT TGGATCGAAT ACCTGGAGCG TGAACAGGGG
GTGAAGGCGA TGGCGATTAC CACTTTACAG GCTGCTCAAG TCAAGAAAAT CCCGGATCTT
TGCAGAAAGT TTGTTCCCAG CCGTGACAAA CTCGAAAAAG ATATCCGCAC CATGATCATG
GGGATCCCGA ACGTCGGTAA GTCCACCATC ATCAACACGC TCGCAGGCAG AACCATCGCT
AAGACAGGTA ATGAACCTGC GGTCACTAAG GTGCAGCAAC GTATCAACCT GAGAAACGGT
ATCGTTCTCT CTGACACTCC GGGGATCTTG TGGCCAAAAG TCGATAATGA AAAAAGTAGT
TATCGCCTGG CCATAACCGG CGCCATTAAA GACACTGCCA TGGAATATGA AGATGTCGCC
ATGTTCGCCG CTGAATACTT TCTACAAGCC TATCCTGAAG CGATTGCTGA GCGTTATAAA
CTTAAAGAGT TGCCCGATAC CGATATCGAA CTTCTCGAAG CCATAGGCCG TAAAAGAGGA
GCGCTACGTC CCGGTGGACG TATCGACCTT CATAAAGTTT CTGAGCTTGT GCTACATGAG
TTCCGTTCAG GAAAAATTGG CCAGCTGTCT CTGGAAACTC CGGAGATGGC CGATATTGAA
AAAGCAGAAG TTGCTAAGTT AGTCGCTGAA AAAGAAGCAG AAAAACAAGC TAAGCAGGAA
GCGGAAAGAT TAAAGCGTGC GGGTAAACGC CACAAATAG
|
|---|
| Protein sequence | MAIQWYPGHM HKARKEIEEV MPQVDLVIEV LDARIPYSSE NPVVSTLRGD KPCIKLLNKS
DLADPETTQR WIEYLEREQG VKAMAITTLQ AAQVKKIPDL CRKFVPSRDK LEKDIRTMIM
GIPNVGKSTI INTLAGRTIA KTGNEPAVTK VQQRINLRNG IVLSDTPGIL WPKVDNEKSS
YRLAITGAIK DTAMEYEDVA MFAAEYFLQA YPEAIAERYK LKELPDTDIE LLEAIGRKRG
ALRPGGRIDL HKVSELVLHE FRSGKIGQLS LETPEMADIE KAEVAKLVAE KEAEKQAKQE
AERLKRAGKR HK
|
|---|
| |