Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2634 |
Symbol | |
ID | 5613161 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3185535 |
End bp | 3189140 |
Gene Length | 3606 bp |
Protein Length | 1201 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640933553 |
Product | ribonuclease |
Protein accession | YP_001474369 |
Protein GI | 157375769 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0740113 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00367459 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACGGA TGTTAATTAA TGCAACTCAA TCTGAAGAGT TGCGCGTTGC CCTTGTTGAT GGGCAACAAC TGTACGATCT TGATATTGAA AGTCCTGGTC ACGAACAGAA AAAAGCGAAC ATTTACAAAG GTAAAATTAC CCGCGTAGAA CCCTCTCTCG AAGCTGCTTT TGTTGACTAT GGTGCCGATC GTCACGGTTT CCTTCCATTA AAAGAGATTG CCAGAGAATA CTTTCCAAAA GGATACTCTT TCCAAGGCCG CCCCAACATC AAAGAGGTGG TTAAAGAGGG TCAAGAGGTT ATTGTTCAGA TTGATAAAGA AGAGCGAGGC AACAAAGGTG CCGCGTTAAC TACTTTTATC AGCTTGGCGG GTTCTTACCT GGTTCTTATG CCAAATAACC CTCGTGCCGG TGGTATCTCC CGTCGAATCG AAGGTGATGA GCGTACCGAA CTTAAAGCGG CTATGTCTGA ACTTGAAGTA CCTCAAGGTA TGGGTTTAAT TGTCCGTACT GCAGGTGTAG GAAAAGATTC AGCCGAACTT AAATGGGACC TAAAAGTACT CGAGCATCAT TGGACTGCGA TTAAAGAAGC GTCTGAAGGC CGTCCGGCTC CTTTCCTGAT CCATCAGGAA AGTAACGTCA TCGTACGTGC GATTCGTGAC TACCTTCGTC GTGATGTTGG TGAAGTACTT ATCGATCACC CGCGTATTTT TGAAGATGCC AAACAGCATG TTGCTTTGGT ACGTCCAGAC TTTGTCGATC GCATCAAGCA ATATGATGCT GAAGTGCCAC TATTCACTCA TTTCCAGATC GAAACACAGA TCGAATCGGC CTTCCAGCGT GAAGTTCGTC TTCCTTCCGG TGGCTCGATT GTTATCGATC CTACTGAAGC CCTAACCTCT ATCGATATCA ACTCTGCTCG AGCAACGAAA GGTGGTGACA TTGAAGAGAC TGCGCTGAAT ACCAACTTAG AAGCGGCAGA TGAAGTTGCT CGCCAGCTAC GCCTGCGTGA TCTGGGTGGT TTGGTTGTTA TCGATTTCAT CGATATGACA CCAGTGCGTC ATCAACGTGA AGTTGAAAAT AGAATGCGTG ATGCAGTGCA TCATGACAGA GCTCGAGTTC AACTGGGTCG TATCTCTCGC TTCGGACTCA TGGAGATGTC AAGACAGCGT CTACGTCCAT CTCTTGAAGA GTCAGCTGCT CACCTGTGCC CTCGTTGCCA TGGTCAAGGT ACAATCCGTG GGACAGAGTC TTTAGCCCTT TCTATTCTTC GTTTGATGGA AGAGGAAGCA ATTAAAGAGA ACACCTCTCA AATTGAAGCT ACAGTTCCAG TTGACGTAGC CGCATTCCTG CTTAACGAAA AGCGTAAAGC CATTCGAATT ACAGAGCAGC GTCATGATGT TGAAGTCTAT GTGATCCCAG ATCCTAACAT GACTACCCCT GACTACCGTG TCGTGCGTCA TCGTAAAGAT GATCAGATCA GTGAGTCCAG CTATAAGCTA TTAGACCAGC CCGAAGCAAA ACTTTACGAG CCTCGTAAAC TTGAACGTGC TGCACCACCT CAACCTGCAC TGAAAGGTTT CTCAGCGCCG GTTAAGGAAG TTGAAAAACC TTCTAGTATC AAAAAAGATG TCAAAACTGA GTCCAAAAAA GATGCTGAAC CCGGTTTAAT CTCTAAGCTA TTCTCTGCCA TCAGCGCGCT ATTCAAGCCT GAAGAGAAAA AAGAGGAACC AAAAAAGAAA CCTCAGTCGA ACCGCGACAG TCAGAACCGC AATAACCGTC GTAACACTCG TCGTAATGAC AATCGACGTA ATCGTGATGA CAAAGATCAA GCGAGTGACA AAGGCGCACG CAATAGCCGC AACAAGAGCG CGGATTCTGC CAAGTCTGAC AAGGTAGAGA AGCAAGTCAG AGGGAAAGAC GAGCAAGCCA AGCGTCAATC TCGCAATGAC AGTAAATCTC GTCGTCCGGC TCAGGAAAGC GATGCCGAAT CGAAAGAACA GCCTAAGCAA GAGGTTGCCA GAGAACGTCG TCAACGCCGT AATATGCGTC GTAAGGTTCG CGTTGAGAAT GAGCAAGCTC AAGTTGAAGA GACCCAGGTT TTAGCTGAGA CTCCGGTAAA AGCTGCGGTA AGTGAAGAGA AGACCACGCG TCCAAAGCGT CAACCAAGAA AGTCAAATAA GCCAAAACCT CAACAGGAAG CGACACAAGA GGCTCAGGCT GCAACTCAGG TTGAAGCCGA AGTATCTGAC ATATCGCTAA CCGAGACAGT TAAAACTGAG ACTCTTGAAG CAAAAGTTGA AGCAAAGGTC GAGCAGACTG CGCCGGTAGC CGTTGATTCG ATTCAAACGA CACCTGTGAC AGACGCCGAT CAGGTTGAAA TCTCTTCGTC AGAAGAAGTT GAAGTTGAAG CCACTGATGA CAAAGAGCAG CGTGAGCCAC GTGAAGGTCA ACGTCGCAGC CGTCGTAGCC CTCGCCATCT TCGCGCCGCT GGTCAACGTC GTCGTCGCGA TGAAGATACC GAAGGCGAGT CTTCATCTGA TGCTGCTCCG GCATTCGTTT CAAATGAAAC TGAAGTAGAA AATCAAGCCA ACGAGACTAA AGCCGCCTCT GTCGCTGTAT CTACTCCGGC TCAACCTGAA ACACCTGAGA TTCCAGCTGA AGATACGCAA AAAGCTGACA CTGAAGTTAA GTCTGAAGCG ACTAAACCTG AGTCAACTAA GCCAGAGGCT ACGGCATCCG TTGCAGCATC CGCTCCAGCA AAGCCAGCCG TTCCTGCTAA AAAACAGGCA CCAGCTAAGC CGAAAACAGC GGTAAAATCT GAAGCCATGG CTGCACCCGC AAAGCCTGCC GCTCCGGTTA AAGCTGAAGC ATCTGTTGCC TCAGCGGCAC CTGCTAAACC AGCCACACCG GTGAAAGCTG AGACCCAGGT GAAAACTGAA GCATCAGTTG CCGCAGCAGC GCCAGCTAAA CCAGCAGTAC AGGTGAAAGC AGAAGCCCCT GTGAAAACTG AAGCATCAGT TGCCACAGCG GCGCCAGCTA AACCCGTCGC GCCAGCGAAA GTTGAGGCTT CAGTAAAAGC AGAAGCCCCT GTGAAAGCTA AAGCATCTGT TGCTGCAGCT GCACCTGCTA AGCCAGCCGC ACCAGTTAAA GCTGAAGCTC CTGTTGAAAC AGAAGTGCCA GCTAAAGCCA AAGCGTCTGT AGCCGCTACA GCACCAGCTA AACCTGCCGC TCCAGTTGAA ACAGAAGTGC CAGCTAAAAC CAAAGCATCT GTAGCCGCTG CAGCACCAGC TAAACCTGCC GCTCCTGTAA AAGCAGAGAC TGTTGTTAAA GCTGAAGCTC CTGTTAAAGC TGAAGCGCCT GTTGAAACGC AAGTATCGAC TCCGACAGAG ATAGCTCCAC AGATTCAAAA AGCTCCAAAA GCAAAATCTG TAAGCTCAAG TCGATTCGGC ACTATGGTCA CCTCTGATAT GACTAAGCCT GTTGTAGAAA ACCGAGAAAA TATTGCGACG CCTTCAGGGC GTCAATATGC CACCTCAGAA TCTACTGCAC CTAGCGAAAA ATCCAGAACG GCCAATACAG CAAACTCGGA AATGGCTAAA CCATAA
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Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKAN IYKGKITRVE PSLEAAFVDY GADRHGFLPL KEIAREYFPK GYSFQGRPNI KEVVKEGQEV IVQIDKEERG NKGAALTTFI SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKAAMSELEV PQGMGLIVRT AGVGKDSAEL KWDLKVLEHH WTAIKEASEG RPAPFLIHQE SNVIVRAIRD YLRRDVGEVL IDHPRIFEDA KQHVALVRPD FVDRIKQYDA EVPLFTHFQI ETQIESAFQR EVRLPSGGSI VIDPTEALTS IDINSARATK GGDIEETALN TNLEAADEVA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN RMRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HLCPRCHGQG TIRGTESLAL SILRLMEEEA IKENTSQIEA TVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPNMTTP DYRVVRHRKD DQISESSYKL LDQPEAKLYE PRKLERAAPP QPALKGFSAP VKEVEKPSSI KKDVKTESKK DAEPGLISKL FSAISALFKP EEKKEEPKKK PQSNRDSQNR NNRRNTRRND NRRNRDDKDQ ASDKGARNSR NKSADSAKSD KVEKQVRGKD EQAKRQSRND SKSRRPAQES DAESKEQPKQ EVARERRQRR NMRRKVRVEN EQAQVEETQV LAETPVKAAV SEEKTTRPKR QPRKSNKPKP QQEATQEAQA ATQVEAEVSD ISLTETVKTE TLEAKVEAKV EQTAPVAVDS IQTTPVTDAD QVEISSSEEV EVEATDDKEQ REPREGQRRS RRSPRHLRAA GQRRRRDEDT EGESSSDAAP AFVSNETEVE NQANETKAAS VAVSTPAQPE TPEIPAEDTQ KADTEVKSEA TKPESTKPEA TASVAASAPA KPAVPAKKQA PAKPKTAVKS EAMAAPAKPA APVKAEASVA SAAPAKPATP VKAETQVKTE ASVAAAAPAK PAVQVKAEAP VKTEASVATA APAKPVAPAK VEASVKAEAP VKAKASVAAA APAKPAAPVK AEAPVETEVP AKAKASVAAT APAKPAAPVE TEVPAKTKAS VAAAAPAKPA APVKAETVVK AEAPVKAEAP VETQVSTPTE IAPQIQKAPK AKSVSSSRFG TMVTSDMTKP VVENRENIAT PSGRQYATSE STAPSEKSRT ANTANSEMAK P
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