Gene Ssed_2625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2625 
Symbol 
ID5613649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3177059 
End bp3177988 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content47% 
IMG OID640933544 
Productmalonyl CoA-acyl carrier protein transacylase 
Protein accessionYP_001474360 
Protein GI157375760 
COG category[I] Lipid transport and metabolism 
COG ID[COG0331] (acyl-carrier-protein) S-malonyltransferase 
TIGRFAM ID[TIGR00128] malonyl CoA-acyl carrier protein transacylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000014528 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000014199 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGATGGAAA ATTTTGCTTT TATTTTTCCA GGTCAAGGTT CTCAAGCGAT TGGGATGTTG 
GCCGACCTTG CGTCAGAGCA TCAAATCGTT GCTGACACAT TTTCTCAAGC GAGTGAAGTA
TTAGGTTATG ATCTGTGGGA ACTTGTTCAA CAAGGTCCAG TCGAAACGCT GAATGAAACA
GATAAGACTC AGCCTGCACT GCTTACCGCG AGTGTTGCCA TTTGGCGAGC CTATGAAGCT
ACCGGTAAGG CAATGCCTGC AGTGCTTGCC GGCCATAGCT TAGGTGAATA TTCTGCACTT
GTTTGTGCGG GTGTGATCGA CTTTATCGAT GCCGTCAAAC TCGTAGAATT ACGAGGTCAA
CTGATGCAAC AAGCCGTGCC GGCAGGCAGC GGTGCTATGT TCGCAATTAT CGGTTTAGAT
AACGAGTCTA TTGCAAAGGC ATGTGAAGAA GCCGCACAGG GTGAAATAGT GAGTCCTGTG
AACTATAACA GTCCTGGACA AGTTGTTATT GCCGGAAGTA AAGCAGCAGT AGAAAGAGCT
GCAGGCTTGT GCAAAGACAA TGGTGCCAAA ATGGCGGTAG CCCTTCCCGT TAGCGTACCC
TCACATTGTG AATTGATGCG TCCGGCAGCA GAAAAGCTAG CGTTGGCACT TGAGGCTATC
GAGTTTAAAA CTCCCAAAGT AAAAGTGATC AATAACGTCG ATGTTGCCAG TCCTGAAACT
GCGACAGAGA TCAAAGATGC CTTGGTCAGA CAACTATATT GTCCTGTCAG GTGGTCTGAT
AGTGTGACTG ATATGTCTGA AGGTGGCATC ACTCATCTTT ATGAGGTTGG GCCGGGTAAA
GTGTTAACCG GGTTGGCAAA ACGAATTAAT CGATCGCTTA CTGCAAAAGC GGTCAACGAT
GCTGCATCAT TCGCTGCATT GACCGAATAG
 
Protein sequence
MMENFAFIFP GQGSQAIGML ADLASEHQIV ADTFSQASEV LGYDLWELVQ QGPVETLNET 
DKTQPALLTA SVAIWRAYEA TGKAMPAVLA GHSLGEYSAL VCAGVIDFID AVKLVELRGQ
LMQQAVPAGS GAMFAIIGLD NESIAKACEE AAQGEIVSPV NYNSPGQVVI AGSKAAVERA
AGLCKDNGAK MAVALPVSVP SHCELMRPAA EKLALALEAI EFKTPKVKVI NNVDVASPET
ATEIKDALVR QLYCPVRWSD SVTDMSEGGI THLYEVGPGK VLTGLAKRIN RSLTAKAVND
AASFAALTE