Gene Ssed_2624 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2624 
Symbol 
ID5613648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3176303 
End bp3177049 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content45% 
IMG OID640933543 
Product3-oxoacyl-(acyl-carrier-protein) reductase 
Protein accessionYP_001474359 
Protein GI157375759 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000523839 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000000127004 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAGTGTAA GTATAGATTT AACAGGCAAA GTGGCGCTTG TTACAGGTGC AAGCCGTGGA 
ATTGGCCGTG CTGTTGCTGA AACGCTGGTT GCTGCAGGTG CGACAGTGGT AGGGACTGCA
ACGAGCGAAC GTGGCGCTGC TGCTATTCAG GAATATTTGG GTGACAATGG TTTAGGCTTA
GTCCTCAATG TTACCGATAG CCAGTCTGTT ACGGATCTTT TTGCTCAGAT AAAAGAAAAA
TCAGGTGATG TCAGTATTTT GGTTAACAAT GCCGGCATTA CTCGTGATAA TTTATTGATG
CGTATGAAAG AAGATGAATG GAGTGATATC ATAGATACCA ACCTTACATC TCTATTTCGT
ACCTCAAAGG CCGTTATGCG ACCTATGATG AAAAAACGTA ATGGTCGTAT CATCAATATC
GGCTCAGTCG TTGGTTCTAT GGGAAATCCG GGACAAACGA ATTACTGTGC TGCTAAGGCC
GGTTTAATCG GTTTTACAAA ATCTCTTGCA AGAGAGGTTG CATCTCGTCA AATAACAGTG
AATGCTATTG CTCCTGGATT TATCCAGACA GATATGACTG ATGAGCTGAC GGAAGAGCAG
CAACAAGGTA TCATGTCTCA GGTTCCGATG GAGCGTTTAG GTCAGGCACA AGAGATCGCT
AATGCCGTGG TCTTCTTGGC TTCAGACTCC GCTGCATACA TCACAGGAGA AACTCTCCAT
GTGAATGGTG GCATGTACAT GGTTTAA
 
Protein sequence
MSVSIDLTGK VALVTGASRG IGRAVAETLV AAGATVVGTA TSERGAAAIQ EYLGDNGLGL 
VLNVTDSQSV TDLFAQIKEK SGDVSILVNN AGITRDNLLM RMKEDEWSDI IDTNLTSLFR
TSKAVMRPMM KKRNGRIINI GSVVGSMGNP GQTNYCAAKA GLIGFTKSLA REVASRQITV
NAIAPGFIQT DMTDELTEEQ QQGIMSQVPM ERLGQAQEIA NAVVFLASDS AAYITGETLH
VNGGMYMV