| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2624 |
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| Symbol | |
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| ID | 5613648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3176303 |
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| End bp | 3177049 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933543 |
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| Product | 3-oxoacyl-(acyl-carrier-protein) reductase |
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| Protein accession | YP_001474359 |
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| Protein GI | 157375759 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000523839 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000127004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGAGTGTAA GTATAGATTT AACAGGCAAA GTGGCGCTTG TTACAGGTGC AAGCCGTGGA
ATTGGCCGTG CTGTTGCTGA AACGCTGGTT GCTGCAGGTG CGACAGTGGT AGGGACTGCA
ACGAGCGAAC GTGGCGCTGC TGCTATTCAG GAATATTTGG GTGACAATGG TTTAGGCTTA
GTCCTCAATG TTACCGATAG CCAGTCTGTT ACGGATCTTT TTGCTCAGAT AAAAGAAAAA
TCAGGTGATG TCAGTATTTT GGTTAACAAT GCCGGCATTA CTCGTGATAA TTTATTGATG
CGTATGAAAG AAGATGAATG GAGTGATATC ATAGATACCA ACCTTACATC TCTATTTCGT
ACCTCAAAGG CCGTTATGCG ACCTATGATG AAAAAACGTA ATGGTCGTAT CATCAATATC
GGCTCAGTCG TTGGTTCTAT GGGAAATCCG GGACAAACGA ATTACTGTGC TGCTAAGGCC
GGTTTAATCG GTTTTACAAA ATCTCTTGCA AGAGAGGTTG CATCTCGTCA AATAACAGTG
AATGCTATTG CTCCTGGATT TATCCAGACA GATATGACTG ATGAGCTGAC GGAAGAGCAG
CAACAAGGTA TCATGTCTCA GGTTCCGATG GAGCGTTTAG GTCAGGCACA AGAGATCGCT
AATGCCGTGG TCTTCTTGGC TTCAGACTCC GCTGCATACA TCACAGGAGA AACTCTCCAT
GTGAATGGTG GCATGTACAT GGTTTAA
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| Protein sequence | MSVSIDLTGK VALVTGASRG IGRAVAETLV AAGATVVGTA TSERGAAAIQ EYLGDNGLGL
VLNVTDSQSV TDLFAQIKEK SGDVSILVNN AGITRDNLLM RMKEDEWSDI IDTNLTSLFR
TSKAVMRPMM KKRNGRIINI GSVVGSMGNP GQTNYCAAKA GLIGFTKSLA REVASRQITV
NAIAPGFIQT DMTDELTEEQ QQGIMSQVPM ERLGQAQEIA NAVVFLASDS AAYITGETLH
VNGGMYMV
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