| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2611 |
|---|
| Symbol | |
|---|
| ID | 5610947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 3164260 |
|---|
| End bp | 3164925 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640933530 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474346 |
|---|
| Protein GI | 157375746 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3132] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0461289 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA CACTCCACGA AGCAAGAGTT ATCGGATGCC TTCTCGAGAA AGAGGTCACC
ACTCCAGAGC AATATCCCCT CTCTTTAAAC TCACTTACCC TTGCCTGTAA TCAAAAATCG
AGCCGTGAGC CGGTACTGTC TATGACTGAA ACCGAAACGC AAATGGCCGT AGACTCTTTG
ATGAAACGAA GACAGGTAAC AGACCAAAGT GGTTTTGGCT CCAGAGTGGT CAAATATAAA
CATCGATTCT GCAATACGGA GTTTAGCGAC CTTCAATTGA GTCCTGCTCA ATATGCCCTC
GTCTGCCTCC TGCTTCTGCG TGGCCCGCAA ACTCCCGGTG AATTAAGGAC CAGAAGTAAC
CGATTGCACC ATTTCGAAGA TGTCGCTGCA GTAGAGAGAA CATTGCTCAC TTTGGCGCAA
GCCGATCCGG CCATCGTTCA TCAACTCGCC AGAGAACCCG GCAGAAGGGA TTCTTGCTAC
GAAGAGTTAA TTTCGGAACA GTCAAAGGGA GTGTCTGCTC CTATCCTGAA GCAATCGGCT
CCAGCTCAAC AAAGCGACAA CAGCCCACAT ACGAGTGATG AGATGGAAAA GTTATCGGCC
CGGGTGACAC TATTAGAAAA AGAGGTCGTC ATGTTGAAAG AAGCACTGCA CGAATTACTT
AATTGA
|
|---|
| Protein sequence | MKLTLHEARV IGCLLEKEVT TPEQYPLSLN SLTLACNQKS SREPVLSMTE TETQMAVDSL
MKRRQVTDQS GFGSRVVKYK HRFCNTEFSD LQLSPAQYAL VCLLLLRGPQ TPGELRTRSN
RLHHFEDVAA VERTLLTLAQ ADPAIVHQLA REPGRRDSCY EELISEQSKG VSAPILKQSA
PAQQSDNSPH TSDEMEKLSA RVTLLEKEVV MLKEALHELL N
|
|---|
| |