| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2608 |
|---|
| Symbol | |
|---|
| ID | 5610936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3159961 |
|---|
| End bp | 3160890 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933527 |
|---|
| Product | adenosylmethionine decarboxylase |
|---|
| Protein accession | YP_001474343 |
|---|
| Protein GI | 157375743 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00535] S-adenosylmethionine decarboxylase proenzyme, eukaryotic form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.383871 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTTG AAGGTTCAGA GAAAAAAATT GAAGTGGTCG TATCCTCTAC GACCCCCTCT
TTACGACAAT TGGGCGATGG TTTTTGGGCT GCGATAGTCG CAAGCGCAAA TGCAGAAATT
CTTTCAAAGA TGTCTAATGC TTATTGTGAC GCTTACATTT TAAGTGAGTC CAGCCTTTTT
GTCTGGGACC ATAAGTTTCT GATGTTAACC TGTGGCACGA CCACGCTTGC CGATGCGGTA
CTCCTGTTTG TTGATAAGTT GGGTGAAAAT GCGATAGCGT CTGCCAGTTA TCAGCGAAAG
AGTGAGTCTC TTTCCCACCT TCAAGCGAGC AGTTTCGAAT GCGACTTGTC ACGGCTCAGA
GAAAAACTCT CGGGGCGCGC CTATCGTGTT GGCCATTTAG ATACTCATCA TCACTATATT
TTTTGCGCCG ACACGAAAGC GCAATGGTGT CCTCCCCAGA ATAGTTGTGA GCTGTTGATG
TATCACATCA AGGGCGATGT CGCCAAATAC CTGAGAAGCG ATAAGCAGTC GAGCAGAGGG
ATCAGAGATA TGCTTAGGCT CGATTGTTTG TTCCCGGATT TCGTATTCGA TGATCATATT
TTCGAGCCCT TTGGTTACTC AATCAATGGT CTGTGGAATG AGAAGTATAT GACGATACAT
ATCACCCCAC AGGAAAAGGG GTCCTATGTG AGTATCGAAA CAAACTTGCA CTTTACTCAA
GGCTCGTTCA ATATATTCTC CGACCTGTTA AATATATTAA ACCCTCGAAG TTGGGATGTT
ATTGGTTTCA ATACCGAAAT CACCTCAGAA GGTTTTCCCG CTTGTATATC GGTGGCGAGT
TGTTCTCTAC CGATCACCCC AAGTGATACT GTTTATTTCA ATCAATATCA TCAGCAGAGT
AATGAAGTGC TGATCCCTGA ATCTTTGTAA
|
|---|
| Protein sequence | MFFEGSEKKI EVVVSSTTPS LRQLGDGFWA AIVASANAEI LSKMSNAYCD AYILSESSLF
VWDHKFLMLT CGTTTLADAV LLFVDKLGEN AIASASYQRK SESLSHLQAS SFECDLSRLR
EKLSGRAYRV GHLDTHHHYI FCADTKAQWC PPQNSCELLM YHIKGDVAKY LRSDKQSSRG
IRDMLRLDCL FPDFVFDDHI FEPFGYSING LWNEKYMTIH ITPQEKGSYV SIETNLHFTQ
GSFNIFSDLL NILNPRSWDV IGFNTEITSE GFPACISVAS CSLPITPSDT VYFNQYHQQS
NEVLIPESL
|
|---|
| |