| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2597 |
|---|
| Symbol | pheT |
|---|
| ID | 5613451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3146468 |
|---|
| End bp | 3148855 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640933516 |
|---|
| Product | phenylalanyl-tRNA synthetase subunit beta |
|---|
| Protein accession | YP_001474332 |
|---|
| Protein GI | 157375732 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0072] Phenylalanyl-tRNA synthetase beta subunit |
|---|
| TIGRFAM ID | [TIGR00472] phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0200655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA GTGAATCTTG GCTTCGTGAG TGGGTAAACC CAAGCATTAG TCGTGAAGAG
TTATCCCATC AAATCACCAT GGCTGGTTTG GAAGTGGATG GTATTGAAGG TGTTGCCGGT
GAGTTCAGCG GTGTTATCGT GGGTGAAGTT GTCGAATGTG GTCAACACCC GGATGCCGAT
AAGCTACGAG TAACAAAGAT CAATGTCGGT GAAGATGAGT TGATCGACAT CGTTTGTGGC
GCACCTAACT GTCGTCTGGG TATTAAAGTT GCAGTGGCTA TGGTCGGTGC AGTACTACCC
GGTGACTTTA AGATTAAGAA AGCCAAACTA CGCGGTGAGC CGTCGTTTGG TATGCTTTGC
TCATACGGTG AGCTAGGCAT AGACGTTGAA AGCGATGGTA TTCTCGAGCT ACCAGTCGAT
GCGCCAATTG GTGCAGACCT TCGTGATTAC TTGAGTCTTA ATGACGCCGT TATCGATGTT
GACTTGACAG CTAACCGTGC AGACTGTCTC GGTATGGCAG GCCTTGCCCG TGAAGTGGGT
GTATTAAACC GTCAGTCTGT GACTGAGCCA ACTTGGGAAG CGGTTAGCCC AACGATTGAT
GACGCTATCA AGATCGATCT TCAGGCGCCG GCATTTTGTG CACGTTATTT AGGTCGTGTG
GTTAAAAACG TCAACGTGAA AGCCGAATCG CCACTTTGGA TGCAAGAGAA GTTGCGTCGC
AGTGGTATCC GCTCAATCGA TCCTATTGTC GATATTACTA ACTACGTGTT GATCGAATTC
GGTCAGCCTA TGCACGCGTT CGATCTTGCT CAACTGGCAG GTGACATACA AGTACGCATG
GGAAGTGGTG ATGAGAAGCT AACACTGCTT GATGGTAAAG AGATCACTGT TCCTGCTGAC
ACTCTAGTCA TTAGCGATCA AGAAAGGCCT CTGGCGCTTG CTGGTGTCTT TGGTGGCGAA
TACTCAGGTG TGAACACCGA TACTCAGGAC ATCATGCTCG AGTGTGCGTT CTTCGCACCT
CTAGCCATCT TAGGTAAGGC TCGTCGTCTT GGCCTGCACA CAGACTCTTC ACATCGCTTC
GAGCGTGGTG TTGACCCTGA GCTGCAGCAT AAGGTGATGG ATCGCGCTAC ACGTCTGGTA
CTCGATATCT GTGGCGGCGA AGCGGGTCCT GTTGTCGAGG CTAAATCAGA AGAGCATCTT
CCTAAGCCTG TTGAGATCGT TTTGCGTCGT AGCAAGCTTG ACCGAATCCT GGGTCACCAT
ATCTCTGATG CCGAAGTGAC TGAGATCCTT GAGCGTCTTG GCTTTGATGT AACAGTGAAT
AGCGATACCT GGGAAGTGAC GACGGCAACG TATCGTTTCG ATATGGCTAT CGAAGAAGAC
TTGATTGAAG AAGTTGCCCG TATCTACGGT TACAACAATA TCCCTAACAC AGCGCCTGTA
GCATCCTTAA GCATGCCTGA TCATAAAGAA TCAGATATCA GCTTAAAGCG TGTTCGCAGC
ATGCTTGTTG CCCGTGGTTT CCAGGAAGCG GTGACTTATA GTTTCGTCGA TCCTAAGTTG
CAAAACTTAG TTCATCCGGG TGAAGAGGCG ATGATATTGC CGAACCCAAT CTCTGTTGAG
ATGTCAGCGA TGAGACTATC GATGTTTACC GGTCTTTTAG GCGCCGTGGG TTATAACCAG
AGCCGTCAAC AAAATCGTGT TCGTCTTTTC GAGACCGGCT TACGCTTTGT ACCTGATACT
ACTGCAGAAT CAAGTGTACG TCAGCAAGCG ATGTTGGGTG CGGTTATCTC AGGTAACCAA
AAAGATGAAC ATTGGTCGAT GGAGTCTAAA ACGGTCGATT TCTTCGATCT TAAGGGCGAC
CTCGAAGCCA TCATCGGCTT GACAGTTTCC GATGTTGAAT TTACTTTTAG AAGTGCAACA
CATCCAGCTC TTCATCCGGG GCAATGTGCT GAAATATTAA GGAATGATCG AGTCATTGGT
ATCATTGGTG CGGTACATCC AAGCTTAGAA AAGCCTTTTG GACTCAATGG TAAAACAATT
GTTTTTGAGC TCGAATTGGA CGCTTTATTA CATGCCGGCT TACCGCTAGC CCAGACTGTA
TCTAAGTTTC CTGCTAACCG TCGTGACATC GCCGTCGTAG TAGATGACAA TGTTTCTGCC
GGAGATGTTG TAAAAATGAT AAGAAAAGTT GGCCAAAATC AGTTGGTTGG CTTAAACTTA
TTCGATGTAT ACCAAGGTAA AGGTGTTGAG CCAGGTAAAA AGAGCCTAGC CATCGCACTT
ACATTACAAG ACAACACACG TACACTTGAA GAAAAAGAGA TAGCTGAGAT GGTAGATTCA
GTGGTTTCCG CTCTCAAGTC AGAGTTCAAC GCACTGTTGA GGGATTAA
|
|---|
| Protein sequence | MKFSESWLRE WVNPSISREE LSHQITMAGL EVDGIEGVAG EFSGVIVGEV VECGQHPDAD
KLRVTKINVG EDELIDIVCG APNCRLGIKV AVAMVGAVLP GDFKIKKAKL RGEPSFGMLC
SYGELGIDVE SDGILELPVD APIGADLRDY LSLNDAVIDV DLTANRADCL GMAGLAREVG
VLNRQSVTEP TWEAVSPTID DAIKIDLQAP AFCARYLGRV VKNVNVKAES PLWMQEKLRR
SGIRSIDPIV DITNYVLIEF GQPMHAFDLA QLAGDIQVRM GSGDEKLTLL DGKEITVPAD
TLVISDQERP LALAGVFGGE YSGVNTDTQD IMLECAFFAP LAILGKARRL GLHTDSSHRF
ERGVDPELQH KVMDRATRLV LDICGGEAGP VVEAKSEEHL PKPVEIVLRR SKLDRILGHH
ISDAEVTEIL ERLGFDVTVN SDTWEVTTAT YRFDMAIEED LIEEVARIYG YNNIPNTAPV
ASLSMPDHKE SDISLKRVRS MLVARGFQEA VTYSFVDPKL QNLVHPGEEA MILPNPISVE
MSAMRLSMFT GLLGAVGYNQ SRQQNRVRLF ETGLRFVPDT TAESSVRQQA MLGAVISGNQ
KDEHWSMESK TVDFFDLKGD LEAIIGLTVS DVEFTFRSAT HPALHPGQCA EILRNDRVIG
IIGAVHPSLE KPFGLNGKTI VFELELDALL HAGLPLAQTV SKFPANRRDI AVVVDDNVSA
GDVVKMIRKV GQNQLVGLNL FDVYQGKGVE PGKKSLAIAL TLQDNTRTLE EKEIAEMVDS
VVSALKSEFN ALLRD
|
|---|
| |