Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2589 |
Symbol | |
ID | 5610805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3139584 |
End bp | 3141083 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640933508 |
Product | sensor histidine kinase |
Protein accession | YP_001474324 |
Protein GI | 157375724 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAGT TTAAGATTAA GCACAAGTTA TTTTTAGCCA TCATCACGGC TAATATCTTT ATCGTGCTTG GCATCTACAT TCTCAGTAGC CTCTCATTCA GCAGCAGTTT TCGTGAATAC CTGGATGCAA ACCGGGAGAA AGAGTTAGCT CCCATGGTCG ACGCTGTGGC CAGAGAGTAC CAGAATCAGC AGGATTGGCA TTGGCTACGG GAACGAGGCC GTTCTACCTG GCGAACGCTT ATCGAAACCT ATTATGTGCC GAGAAACAGC AACCCTGACC GGGCACAATT TCGGCCACAA GCAGCAAATG GTGAGCGTCC GCCACGGCCA AGGCCGGATA ATAGGCCCCT TATCAGACAA GAGAACAGAC CCGTTGACCG AAGAGCCCCA CAACCCGGTT TAGCCCATGA TGCCCCCCGC CCCAGACCAC CGGTCATTTT TATCGCCGAC AAAGATCATC GACTGCTGCT GGGCCGGGAA GATAAACTTG ATACCGTCAA CTGGATAGCC ATCACGCTGG AGAACCAAAC GGTAGGATAC CTGGGCTACC ATAGAACTAC CCATATCACC TCGCAGCTTG ACCAATTGTT TGTCGATAAG TTAACGACCA ATTTAATCTG GATTGTTATC TTCGTCATAA TAATTTCGGC GCTTATCGCC CTGATCCAGA GCCGATTTTT CGTTAAACCT ATTATTAAAC TCAGCAATGC CGCCCATAAG ATCAGTAAAG GCGAGTTTAC CACTCGCATC ACAGTGTCGA GCGATGATGA GATTGGCGAG CTATGTCAGG ACTTTAATCG TCTGGCAACG TCTTTGGATC GTAACTTGAA AGCCCGTCAG CAGTGGATAG CCGATATCTC CCACGAGCTC AGAACCCCCG TCGCCATCTT GCAGGGGGAG TTAGAAGCAC TTCAGGATGG TATTCGCGAC TACTCGGCCG AGTCGGTCAA CTCCCTCTAC CAAGAGGTTA AGCGTTTAGC ATTTCTGATT AATGACCTGC ATGAGTTGTC TATGTCAGAC ATTGGCGCGC TGAGTTATCG CTTCGAAAAT GTCGATCTCA TTGAGATTTT AGACCAGGTT ATCGAGAGTA AAAAAGAGAG CATAGATAGT GCCGGGTTTA GCATCGAACA GATCTGTGAA CAGGATGAAT TGATACTTAA GGGCGATGAG CACCGCCTGA ATCAACTGTT CCTCAATCTG CTCAATAATA GTCTGGCCTA TAGCGATCCC AATGGCATGG TCAAGGTGGC AGTTAAAACA GAGGGGCCGA ACGTTATCAT CAGCTGGAGC GATACAGCAC CGGGAGTGAC AGAAGAGCAG CTGACTAAAC TGTTTGATCG CCTCTATCGC ACCGAATCAT CACGAAATCG AAATTCGGGC GGTTCGGGTA TAGGCTTATC CATAGCGAAG AACATCGTCG AGGCGCATAA CGGCACCATT ACCGCCAGGC CTTCAAGCTT AGATGGCGTG AGGTTCGATA TCACGCTTCC GCTCAAATAA
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Protein sequence | MMKFKIKHKL FLAIITANIF IVLGIYILSS LSFSSSFREY LDANREKELA PMVDAVAREY QNQQDWHWLR ERGRSTWRTL IETYYVPRNS NPDRAQFRPQ AANGERPPRP RPDNRPLIRQ ENRPVDRRAP QPGLAHDAPR PRPPVIFIAD KDHRLLLGRE DKLDTVNWIA ITLENQTVGY LGYHRTTHIT SQLDQLFVDK LTTNLIWIVI FVIIISALIA LIQSRFFVKP IIKLSNAAHK ISKGEFTTRI TVSSDDEIGE LCQDFNRLAT SLDRNLKARQ QWIADISHEL RTPVAILQGE LEALQDGIRD YSAESVNSLY QEVKRLAFLI NDLHELSMSD IGALSYRFEN VDLIEILDQV IESKKESIDS AGFSIEQICE QDELILKGDE HRLNQLFLNL LNNSLAYSDP NGMVKVAVKT EGPNVIISWS DTAPGVTEEQ LTKLFDRLYR TESSRNRNSG GSGIGLSIAK NIVEAHNGTI TARPSSLDGV RFDITLPLK
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