Gene Ssed_2589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2589 
Symbol 
ID5610805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3139584 
End bp3141083 
Gene Length1500 bp 
Protein Length499 aa 
Translation table11 
GC content49% 
IMG OID640933508 
Productsensor histidine kinase 
Protein accessionYP_001474324 
Protein GI157375724 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGT TTAAGATTAA GCACAAGTTA TTTTTAGCCA TCATCACGGC TAATATCTTT 
ATCGTGCTTG GCATCTACAT TCTCAGTAGC CTCTCATTCA GCAGCAGTTT TCGTGAATAC
CTGGATGCAA ACCGGGAGAA AGAGTTAGCT CCCATGGTCG ACGCTGTGGC CAGAGAGTAC
CAGAATCAGC AGGATTGGCA TTGGCTACGG GAACGAGGCC GTTCTACCTG GCGAACGCTT
ATCGAAACCT ATTATGTGCC GAGAAACAGC AACCCTGACC GGGCACAATT TCGGCCACAA
GCAGCAAATG GTGAGCGTCC GCCACGGCCA AGGCCGGATA ATAGGCCCCT TATCAGACAA
GAGAACAGAC CCGTTGACCG AAGAGCCCCA CAACCCGGTT TAGCCCATGA TGCCCCCCGC
CCCAGACCAC CGGTCATTTT TATCGCCGAC AAAGATCATC GACTGCTGCT GGGCCGGGAA
GATAAACTTG ATACCGTCAA CTGGATAGCC ATCACGCTGG AGAACCAAAC GGTAGGATAC
CTGGGCTACC ATAGAACTAC CCATATCACC TCGCAGCTTG ACCAATTGTT TGTCGATAAG
TTAACGACCA ATTTAATCTG GATTGTTATC TTCGTCATAA TAATTTCGGC GCTTATCGCC
CTGATCCAGA GCCGATTTTT CGTTAAACCT ATTATTAAAC TCAGCAATGC CGCCCATAAG
ATCAGTAAAG GCGAGTTTAC CACTCGCATC ACAGTGTCGA GCGATGATGA GATTGGCGAG
CTATGTCAGG ACTTTAATCG TCTGGCAACG TCTTTGGATC GTAACTTGAA AGCCCGTCAG
CAGTGGATAG CCGATATCTC CCACGAGCTC AGAACCCCCG TCGCCATCTT GCAGGGGGAG
TTAGAAGCAC TTCAGGATGG TATTCGCGAC TACTCGGCCG AGTCGGTCAA CTCCCTCTAC
CAAGAGGTTA AGCGTTTAGC ATTTCTGATT AATGACCTGC ATGAGTTGTC TATGTCAGAC
ATTGGCGCGC TGAGTTATCG CTTCGAAAAT GTCGATCTCA TTGAGATTTT AGACCAGGTT
ATCGAGAGTA AAAAAGAGAG CATAGATAGT GCCGGGTTTA GCATCGAACA GATCTGTGAA
CAGGATGAAT TGATACTTAA GGGCGATGAG CACCGCCTGA ATCAACTGTT CCTCAATCTG
CTCAATAATA GTCTGGCCTA TAGCGATCCC AATGGCATGG TCAAGGTGGC AGTTAAAACA
GAGGGGCCGA ACGTTATCAT CAGCTGGAGC GATACAGCAC CGGGAGTGAC AGAAGAGCAG
CTGACTAAAC TGTTTGATCG CCTCTATCGC ACCGAATCAT CACGAAATCG AAATTCGGGC
GGTTCGGGTA TAGGCTTATC CATAGCGAAG AACATCGTCG AGGCGCATAA CGGCACCATT
ACCGCCAGGC CTTCAAGCTT AGATGGCGTG AGGTTCGATA TCACGCTTCC GCTCAAATAA
 
Protein sequence
MMKFKIKHKL FLAIITANIF IVLGIYILSS LSFSSSFREY LDANREKELA PMVDAVAREY 
QNQQDWHWLR ERGRSTWRTL IETYYVPRNS NPDRAQFRPQ AANGERPPRP RPDNRPLIRQ
ENRPVDRRAP QPGLAHDAPR PRPPVIFIAD KDHRLLLGRE DKLDTVNWIA ITLENQTVGY
LGYHRTTHIT SQLDQLFVDK LTTNLIWIVI FVIIISALIA LIQSRFFVKP IIKLSNAAHK
ISKGEFTTRI TVSSDDEIGE LCQDFNRLAT SLDRNLKARQ QWIADISHEL RTPVAILQGE
LEALQDGIRD YSAESVNSLY QEVKRLAFLI NDLHELSMSD IGALSYRFEN VDLIEILDQV
IESKKESIDS AGFSIEQICE QDELILKGDE HRLNQLFLNL LNNSLAYSDP NGMVKVAVKT
EGPNVIISWS DTAPGVTEEQ LTKLFDRLYR TESSRNRNSG GSGIGLSIAK NIVEAHNGTI
TARPSSLDGV RFDITLPLK