| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2588 |
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| Symbol | |
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| ID | 5610804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3136345 |
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| End bp | 3139413 |
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| Gene Length | 3069 bp |
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| Protein Length | 1022 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640933507 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474323 |
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| Protein GI | 157375723 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02145] Fibrobacter succinogenes major paralogous domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTCA CCAGACAACA CTCTACTGCA TCTGTAAGGA TTGCCTCTGT GAGCATTGCA
TCGCTATTAG CTATCGCGCT GAGTGGCTGT GGTGGCGACT CCAGCGAGGC TGATGACACT
CAGCTTCCCC CCACCGTTCC TCCCGCAGTC ACTCCCGTAG ATAATAGTGC GCCAGTGGCT
AACGCAGGTA TCGACCAAAC GGTTATGTCA GCTGTAGTCG TCACCCTGGA CGCCAGTGGC
AGTAGTGATG CCGATGGTGA CACCTTAAAC TACCAATGGA CATTTATCTC TTTGCCCGAT
GGCAGCGTTG CCGCCCTCAA TGGTGCCAGC AGCGCAAATC CTAGCTTTAG CGCTGACATA
GATGGCAGCT ATGTTATTGC ATTAACCGTA TCGGATGGCA CAGACAGCAG TGTCGACACC
GTTACCGTTA CCGCAGCGGC GACGGACACT AACAATACGC CCGTGGCCAA TGCCGGAGTC
GACAGAGGCG TCACAACAGG GTCCAGTATT ACGCTCGATG GCAGCGCCAG CTCGGACGTC
GATGGTGATG CCCTCACCTA CAGCTGGACA TTAGATTCAG TCCAGGTTGG CAGCAGTGCC
AGCCTGAACA GTGCAGGCAC GGTGAGCCCT GAGTTTACCG CCGATACCGA TGGCGACTAT
CAGGTATCTT TAGTTGTCAG TGATGGCAGT GAGACCAGCC TGGCCGATTC GGTGACCATT
AGCAGCACCA GCAGCGGCAC GACACCTGTC AGTCGAAGCT ATGCCATCGT CGATACCAAT
CAAAACCAGT GCTACGACTC AACATCCGGG GGCGCCACCA GCTGTATAGG CAACGGCTAT
GACGCCGACT ATAGCGGTAA CCAGCCCAGT TATACCCTCA GCGATGACGG GTTAATCGTT
ACCGACAATA TTACCGGCCT TATCTGGCAG CAGAGCAGTG ATATCAATGG TGACGGTTCA
CTGACCAGCG ATGACAAGCT TTATCAGAGT GACACAGTAA GCTACTGCGA AAATTTAACC
TATGGTGGAC GCAATGACTG GCGTCTGCCC AGCATCAAAG AGTCATACTC CTTGATCCAA
TTCAGCGGCA AAGACCCAAG CGGCTACCAG GGCACGGATA CCTCAGCGTT AACCCCTTTC
ATCGATGAAA TATTCGATTG GGCTTTCGGT GATCTAGCCA GTGGCGAGCG GATCATCGAC
GGCCAGTTTG CCTCCAGCAC TCAGTATGTC AGTACGACCA TGAACGCCGA CGCCACCACA
TTTGGGGTTA ACTTCGTCGA TGGTCGCATC AAGGGCTACC CCAGCGAGAG ATTACCCTTC
TATGTGCGCT GTGTCAGCGG CAACACAGAT TATGGCGTCA ATGCGTTCAG TGATAATGGC
GATCTGACAG TCAATGACGA TGCCACCGGT TTGATGTGGC AGCAAGATGA TAGCGACTCA
GTGAATTGGG AGGATGCGGT AGCGCAATGT GAAGCGGCGA CCACCGCCTC ACACACAGAC
TGGAGACTGC CTGATGCAAA GGAGCTGCAG AGCATAGTAG ATTACAGCCG CTCACCGGAC
ACCCATAACC AGGCAGCCAT AGATCCGATA TTTAATGCCA GCTCGTTTAA CAATGAAGCC
GGTGAAGATG ACTGGGGTTT TTATTGGGCA TCGAGTACCC ATGCCACCTA TAACGATAAT
GGCAGCAGTG CCACCTATGT CTCATTTGGC CGCGCCCTGG GCTATATGAA TGGCAATATC
ATGGACGTAC ACGGCGCGGG TGCTCAGCGC AGTAACAATA AAACGGCGGT CTCCTCCACT
CCGGGGGCAG GATCGAGCAC CGGCGTCAAC GGCACCTTCT ATTACCACGG GCCTCAGGGC
GATATCTTGC GGGATAACAA CAAGGTCAGG TGTGTACGCG ATAGTGAGCC GAGCGAAGAT
GTAGTAGCTA GTGAAGGCTA CACCCTGTTT TCGCCGATGC AATCGACCGA CACTTACCTG
ATAGACCAGC AAACTAACAC GCTGCATAGC TGGCAGAGCG ACTACCGCCC TGGCCTGTCG
GTCTACCTTA TGGAAAGCGG CGAACTGTTA CGACCGGGCG TGATAAACAA TAAACCCACC
ACATTTTCGG GGCAAACCGG CGGCAGCGCC GGTGTCATCG AGGTTTTGGA CTGGAATAGC
GATGTTATTT GGAGCACCAG TCTGGCCACC GACAGCTATC TGAGCCATCA CGATGTTGAG
GTTCTGCCTA ACGGCAATAT TCTGGCCATT GTCTGGGAGG CTAAAACCGC CGAAGAGGCG
CTGGCGCTGG GCAGAACCAG TGTATTCGAT GACACCCTGT GGGCCGACGC GGTCTATGAA
ATATGTCGGG CCGGTGAACA GAGCAGCTGC ACCGACGGTG AGATTGTCTG GCGCTGGAGT
ATCTGGGATC ATGTCGTCCA GGATGTAGAT AGCAGCATTA CCCAGACTTA TGTTACCGAT
ATCGGTGAGC ATACCGATAA GGTTGATCTG AACTTCTTTA ACGGCTCAGG CTCCGCCGAC
TGGACCCATG TTAACTCGGT CGACTACGAC AGCGCTACCG ACCAAATATT GATAAGCGTG
CATAACTTCA GTGAGTACTG GGTCATCGAC CATAGCGGTG CCAGCCAAGG TATAGTGAGC
CGGGTCGGCA ATCCCTCGGC CCATGGAGGC GACGGCGAGC AAACTCTGTT TGTTCAGCAT
GACGCCCAAT TTATTGAATC AGGTACACCC GGTGATGGCA ATATTTTGGT CTTTAACAAT
GGCGCCAACC GACCCGAGGG CAATTACTCC TCCGTAGACG AATTTTGTTT TCAGGGAGAG
GACTGCACAC CCGGTGAGCT GGTGAATAGT TATAGCGAAG GCGTTTCCGG CGAGTTTTAT
GCCGACCATA TCTCGGGGGC GCAGCGACTT GAGAACGGCA ATACCCTGGT TTGTGAAGGC
ACAGAGGGAC GCTTGTTTGA ATATAATGCC AGTCATGAAG TCGTGTGGGA ATATCAATAT
GGCTCAGAGA TATTTAAGGC GACACATTAC AGGAGTGATT ATTCTGGATT GGCAGAGCTG
AATGAGTAG
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| Protein sequence | MTFTRQHSTA SVRIASVSIA SLLAIALSGC GGDSSEADDT QLPPTVPPAV TPVDNSAPVA
NAGIDQTVMS AVVVTLDASG SSDADGDTLN YQWTFISLPD GSVAALNGAS SANPSFSADI
DGSYVIALTV SDGTDSSVDT VTVTAAATDT NNTPVANAGV DRGVTTGSSI TLDGSASSDV
DGDALTYSWT LDSVQVGSSA SLNSAGTVSP EFTADTDGDY QVSLVVSDGS ETSLADSVTI
SSTSSGTTPV SRSYAIVDTN QNQCYDSTSG GATSCIGNGY DADYSGNQPS YTLSDDGLIV
TDNITGLIWQ QSSDINGDGS LTSDDKLYQS DTVSYCENLT YGGRNDWRLP SIKESYSLIQ
FSGKDPSGYQ GTDTSALTPF IDEIFDWAFG DLASGERIID GQFASSTQYV STTMNADATT
FGVNFVDGRI KGYPSERLPF YVRCVSGNTD YGVNAFSDNG DLTVNDDATG LMWQQDDSDS
VNWEDAVAQC EAATTASHTD WRLPDAKELQ SIVDYSRSPD THNQAAIDPI FNASSFNNEA
GEDDWGFYWA SSTHATYNDN GSSATYVSFG RALGYMNGNI MDVHGAGAQR SNNKTAVSST
PGAGSSTGVN GTFYYHGPQG DILRDNNKVR CVRDSEPSED VVASEGYTLF SPMQSTDTYL
IDQQTNTLHS WQSDYRPGLS VYLMESGELL RPGVINNKPT TFSGQTGGSA GVIEVLDWNS
DVIWSTSLAT DSYLSHHDVE VLPNGNILAI VWEAKTAEEA LALGRTSVFD DTLWADAVYE
ICRAGEQSSC TDGEIVWRWS IWDHVVQDVD SSITQTYVTD IGEHTDKVDL NFFNGSGSAD
WTHVNSVDYD SATDQILISV HNFSEYWVID HSGASQGIVS RVGNPSAHGG DGEQTLFVQH
DAQFIESGTP GDGNILVFNN GANRPEGNYS SVDEFCFQGE DCTPGELVNS YSEGVSGEFY
ADHISGAQRL ENGNTLVCEG TEGRLFEYNA SHEVVWEYQY GSEIFKATHY RSDYSGLAEL
NE
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