| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2564 |
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| Symbol | |
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| ID | 5609669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3113776 |
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| End bp | 3114519 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933483 |
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| Product | pirin domain-containing protein |
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| Protein accession | YP_001474299 |
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| Protein GI | 157375699 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1741] Pirin-related protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.216137 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTTCAT TACGTCCTGC ACAGCAACGA GGCAAAGCCA ATTTCGGTTG GTTAAACAGC
CAACATACAT TTTCATTCGG TGATTATTAC GATCCGCAGC ATATGGGGTT TTCAGCACTG
AGGGTGATTA ATGATGATTT GGTCACTCCG GGAGCGGGAT TTTCTACTCA CGGTCATCGT
GATATGGAGA TCATCAGCTA TGTGCAATCG GGGTCGATAG CCCATAAAGA CAGTGAAGGG
AACATTAAGG TATTGTCTGC GGGTGAATTT CAGCTGATGT CTGCCGGAAG CGGCATCACC
CACAGCGAGT ACAATGCTTC ACAGACGGAG CCACTGAAGT TCTTACAAAT TTGGATCCAA
CCTAATACCT TAGGTGGTAC ACCCGGATAC CAACAAAAAA ACTTTGGACA GGCCGAAGGG
CTAACCACAA TTGCATCGCC TTATAGAGAG AAGGGTAGTG AAAACAGGGG GGAGAAGGGT
GGTGAAAAGA GAGGTGAGCG GGGGGGCTTC GAACTGAAGC AAGATGCGAC ACTGTCGCAA
TTAATTCTGG CGCCTAAATC TGAACAGGTT TATCAAATTG AAGCCGGACG TAATATTTAT
GTCCACCATG TTGCGGGTCA ACTGTCTATT GAAGATAACC TGTTAACGGC AGGTGATGGG
GCTAAAATAA CCGAAATGCA AGCCATTACC TTTGTGAACG CATCTGACAG TCAAGCGACG
GCATTAATAT TTAACTTGCC GTAA
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| Protein sequence | MISLRPAQQR GKANFGWLNS QHTFSFGDYY DPQHMGFSAL RVINDDLVTP GAGFSTHGHR
DMEIISYVQS GSIAHKDSEG NIKVLSAGEF QLMSAGSGIT HSEYNASQTE PLKFLQIWIQ
PNTLGGTPGY QQKNFGQAEG LTTIASPYRE KGSENRGEKG GEKRGERGGF ELKQDATLSQ
LILAPKSEQV YQIEAGRNIY VHHVAGQLSI EDNLLTAGDG AKITEMQAIT FVNASDSQAT
ALIFNLP
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