Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2551 |
Symbol | |
ID | 5609722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3095106 |
End bp | 3095924 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933470 |
Product | extracellular solute-binding protein |
Protein accession | YP_001474286 |
Protein GI | 157375686 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.36291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACATCTG TTAAGTACCT TTTATTATTC ATAACTTTAT ATCTGGGAGT TTGCCCAGGC CTAAAGGTGT GGGCTGTGGT TAGTGAGCCT GACAGTTCAT CGTCGCTGGT TTTTGTGACC AGCCCTTATG AGCCTTATGT TATCGACGAT GAGGGCAGGG CGAGCGGGAT ATTTCCCGAT ATTATTCGCG CCGTTTTTAG AGGAAGTAAT ATACGACCTG AATTTGAGTT TCTACCTTGG TTGAGGGGAG AGCACGAGGT TCAGGCCGGA AAGGCGTTTG CTACGTTCCC CTATCTGAAG ACAAAAGCCA GAGTCGAGAC TTTCGGGTTT TCGGGACCGA TTATCTATTT CTTTCCTAAG TTTTTCTATA ACCGATCTCG TTTCCCCGAT GGATTCGAGT GGCAGGCACT CACAGATTTC AAGGGATATA AAATCGGTGG CGTGCGGGGG TATTGGTATG AACAAGATTT TAAAGATGCC GAGTTGACGA CGCTTTATGT CACCTCTGAT AGGCAAAATA TTGAGATGTT ACGCATTAAA CGTATCGATT TTACCCTTAT CGATGAACTT GTCGGCTGGA ACCTGATTAG AAGAACTGCA CCGTCTTACA TCGGTACTTA TGCGGTTGCG GCCAAGGCTG AAAGTAGCGC CGCCTTTCAT ATTATGATCT CACCCGATTA CCCGGAAGGA GACAAGCTCA CACTGCAACT GAATATGGGA TTCAAGCGAA TACAGCAAAG CGGAGAATAC CAAGAGATAC TGGAGAGGTA TCACGTTCCC GCCGATTACT CGGTAACTCA AACATTAAGC GCTCATTAA
|
Protein sequence | MTSVKYLLLF ITLYLGVCPG LKVWAVVSEP DSSSSLVFVT SPYEPYVIDD EGRASGIFPD IIRAVFRGSN IRPEFEFLPW LRGEHEVQAG KAFATFPYLK TKARVETFGF SGPIIYFFPK FFYNRSRFPD GFEWQALTDF KGYKIGGVRG YWYEQDFKDA ELTTLYVTSD RQNIEMLRIK RIDFTLIDEL VGWNLIRRTA PSYIGTYAVA AKAESSAAFH IMISPDYPEG DKLTLQLNMG FKRIQQSGEY QEILERYHVP ADYSVTQTLS AH
|
| |