| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2546 |
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| Symbol | |
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| ID | 5609810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3091318 |
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| End bp | 3092058 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640933465 |
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| Product | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase |
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| Protein accession | YP_001474281 |
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| Protein GI | 157375681 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0106] Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase |
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| TIGRFAM ID | [TIGR00007] phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAATTC CAGCAATCGA TCTCATCGAG GGTCAGGTAG TACGTCTGTA TCAGGGCGAT
TACGCTCAGA AGACTACCTT CGACCTCTCT CCCCTGTCTC AACTCAAATC CTATGAGGCA
CAAGGCGCCA ACTGGCTTCA TATTGTCGAT CTCACCGGCG CTAAAGATCC CAATGCCCGT
CAAACCCGCT TAATCGCTGG GCTGGTTTCC GGCCTGGATG CCAACATTCA GGTGGGTGGT
GGTATTCGCA CTGAGGCCCA GCTCGCCGAG CTGCTGGAGA TCGGTGTGAA GCGTGTGGTT
ATCGGATCTC TGGCCGTAAA AGAGACCGCC CTGGTACAGA GCTGGTTTAA AAAGTACGGC
GCCGATGCCA TCTGTCTGGC ATTAGATGTG AATATCAACG AGCAGGGCGA GAAGATTGTC
GCGGTATCGG GCTGGCAGTC CGGTGGCGGC AAGAGTTTAG AATCTCTCGT CGACGCCTTT
AAGCCCTATG GCCTTAAACA CGCGTTAGTG ACCGATATCA GCCGCGACGG CACGCTGAAA
GGCGCCAATA CTGACTTGTA CCGTGAGATA GCGGCGGCCT ATCCGGATAT CAACTGGCAA
GCCTCGGGCG GTATCGCCAC ACTCGATGAC GTGGCAGCGG TCAGAGATAG CGGCGCCGAT
GGCATCATCA TAGGTAAAGC ACTCTTAATC GAAAACTTTA CCGTCCGGGA GGCGATCCAA
TGTTGGCCAA ATCCACAATA A
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| Protein sequence | MIIPAIDLIE GQVVRLYQGD YAQKTTFDLS PLSQLKSYEA QGANWLHIVD LTGAKDPNAR
QTRLIAGLVS GLDANIQVGG GIRTEAQLAE LLEIGVKRVV IGSLAVKETA LVQSWFKKYG
ADAICLALDV NINEQGEKIV AVSGWQSGGG KSLESLVDAF KPYGLKHALV TDISRDGTLK
GANTDLYREI AAAYPDINWQ ASGGIATLDD VAAVRDSGAD GIIIGKALLI ENFTVREAIQ
CWPNPQ
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