| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2539 |
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| Symbol | |
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| ID | 5612961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3084740 |
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| End bp | 3085492 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933458 |
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| Product | branched-chain amino acid transport protein AzlC |
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| Protein accession | YP_001474274 |
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| Protein GI | 157375674 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) |
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| TIGRFAM ID | [TIGR00346] 4-azaleucine resistance probable transporter AzlC |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0525733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC TCATCAAAGC TGGTTTGAAA GCGATCTTCC CCTTGTGCAT TGGGGCGTTC
CCTTTCTCAT TTATCGTCGG AGCTATCAGT ATTAGTGCGG GTATGACTCT GGGACAGAGT
ACATTCTGGT CGCTAACAGT GTTCGCGGGA TCTTCTCAGA TGGTGGCACT CGGATTGATT
CAATCCTCTG CCAGTATCTT AGTTATCATG CTCACAACCT TTATCATCAA CCTGCGTCAT
CTCCTCTATA GCGCCTCGCT ATCTGAACAT ATCAAAGACT ACCCACTGCA TATTCGCGCC
CTGATGGCCT ATGGCCTAAC CGATGAGGTT TATGCCGCCA CCATAGGTGA GGTCAAACAG
GAAAAAGTAG GAAGACACTG GTTTTATCTT GCTGCCATGG GTGGATTTTG GATGAACTGG
GTGTTTGCTA ACTTTCTTGG TGCTTTAGTG GGCTCATCTT TTCCTGAGGT AGCCCATTAT
GGTCTGGATT TCGCCATGGT AGCTGCATTT ATTGCCATCG TTATTCCTCA GGTAAAGAGT
CGTGAGTGTA TCGTCGCCGC CATCGTAGCC AGTGTCACAG GGATCTTGCT CTCAGGACTT
CCCTACTCGT TAGGCTTAGT CGTCGCCGCA ATTACAGGCG TCTATGCCGG TTATCGAATG
GATCTGTCCA GTGAAAGAAT GGCCGCGACG GCCGTAAAGA CACAAGAAAC AAACCCAATA
AAACCCCTTC CCGTAACGAA CTGTGAGGTA TAA
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| Protein sequence | MNKLIKAGLK AIFPLCIGAF PFSFIVGAIS ISAGMTLGQS TFWSLTVFAG SSQMVALGLI
QSSASILVIM LTTFIINLRH LLYSASLSEH IKDYPLHIRA LMAYGLTDEV YAATIGEVKQ
EKVGRHWFYL AAMGGFWMNW VFANFLGALV GSSFPEVAHY GLDFAMVAAF IAIVIPQVKS
RECIVAAIVA SVTGILLSGL PYSLGLVVAA ITGVYAGYRM DLSSERMAAT AVKTQETNPI
KPLPVTNCEV
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