| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2538 |
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| Symbol | |
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| ID | 5609586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3084065 |
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| End bp | 3084445 |
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| Gene Length | 381 bp |
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| Protein Length | 126 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933457 |
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| Product | endoribonuclease L-PSP, putative |
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| Protein accession | YP_001474273 |
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| Protein GI | 157375673 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
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| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0266359 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.960709 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGAAGA TCATCACATC AGATAAAGCC CCCGAAGCCA TCGGCCCTTA TTCACATGGC
AATGCCTACG GGAACTTAAT TTTCACTTCT GGTCAGTTAC CTGTAAGTAA GGAAGAAGGC
GGTGTTGTCG AAGGTGGCAT TTCGGCGCAA TCTCGCCAAT CTCTGGAAAA TCTGAAATCT
GTGCTCGAGG CCGGAGGAGG GGAGTTGGAT ACGGTATTAA AGACCACCTG TTATCTTTCA
GATATTCAAG ACTTCGCCGC GTTCAATCAG GTGTACCAGG AGTTTTTCGC ACACGATTGT
CCGGCACGCA GTTGTTTTGC GGTTAAAGAC TTGCCTCTTG GTGTCAAAGT TGAAATTGAA
GCCATTGCAT TTAGTAAATA A
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| Protein sequence | MKKIITSDKA PEAIGPYSHG NAYGNLIFTS GQLPVSKEEG GVVEGGISAQ SRQSLENLKS
VLEAGGGELD TVLKTTCYLS DIQDFAAFNQ VYQEFFAHDC PARSCFAVKD LPLGVKVEIE
AIAFSK
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