| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2535 |
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| Symbol | |
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| ID | 5609583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3079852 |
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| End bp | 3081789 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933454 |
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| Product | helicase C2 |
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| Protein accession | YP_001474270 |
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| Protein GI | 157375670 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1199] Rad3-related DNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.801549 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCAGCA CAACGACAAG CAGACTGACA AAAGAGATCG CACTGGCGTT CGGAAGCGAT
GGCATGCTTG CCCGCCATAT TCAAGGCTAT AGCGCACGTG ATGTGCAGGT TCAGATGGCT
GAGGCCGTTT GTGATGCTAT CAATAACAAG AGCGACCTGG TTGTTGAAGC GGGCACCGGT
GTCGGTAAAA CCTTTGCGTA TCTTATTCCT GCGTTGCTCA GTGGCAAGCA GGTGATTATC
AGTACCGGCA GTAAAAACCT GCAAGAGCAG CTGTTTTATA AAGACCTGCC CAGTTTACTC
TCCATGTTGG ACATTTCCCC TAAGGTCGCA CTGTTAAAAG GACGGAATAA CTACCTGTGT
CAGGATCTGA TGGAGAAGCA GCTTAATGGT TGTGATTCAT TAGATCCTAA GGTGTTAGAC
GACCTGTTGC GCATCAATCA GTGGGCGGGG CAGACCAGCG ATGGCGATCT TGGCGGGTTA
ACCTCGGTCT CTGAAAATGC CGATGTGTTA CCGCTTATTG CCAGCAGCCG CGAAAAGTGT
ACCGGGAAAA GGTGCGATCA CTATGAGGTG TGCTTTACCC GCAAAGCGAG AAGTCGCGCC
ATGGATGCCA AGGTTATCGT GGTCAACCAT CATCTGTTCT TTGCCGACAG GGTGCTCAAA
GAGACGGGGT TTGCCGAGCT GCTACCCGAC TCCGATGTGG TGGTATTCGA TGAGGCGCAC
TTGCTCAGTG ATATTGCAGT GACCTATTTC GGTCAGCAAA CTTCTACACG TGGCCTGACC
GAACTGCTTA ACTCCATTAT CGAAATATAT CGCAAGGAGC TGAGAGACTC GCCGCAGATT
GAAGCCTTAA CGTCTCGTTG CATCAGTCAG TTAAATGATT GGCATCAACA GATGTTCGAC
CGCGATGGTT CTGATTGGCG TCAATTGATG GGTGACAAGG ATCTGGCTGC CTGTTCATGG
GGACTATTAA AAGAACTTCA GTCACTCGAG GCCCTGTTGC AATCTCACGT GGGACGGAGT
GAAGATCTGG ATGATGGCCT GGAGAAACTC AACGGATTTA CCAATAAGTT AGCCCTGTTT
TTTCAATGTG AAAATAATCA AGCTGCCTAT AGTGTCGAGT ATGGTCACCG TTATCTTACG
TTACGTATCG CGCCAATCAA TGTCGCTCGT GAGTGCGAGA AGCTGTTTGA TGCCCAAACC
AGCTGGGTGT TTACCTCTGC AACCTTGCAG ATAAACCGAG ATCTGACCCT GTTTACCAAG
GGACTCGGGA TCGCCAAGGC CAGGCAGTTG ATCTTAGACA GTCCCTTCGA TTACCCAAAT
AATGCGCTTT TATGTGTGCC AAGGCATCTG TCGAAGGTGA GCAATCAGGA GGCTGCGGTC
AGAGAGTTAG TCGATATTGC AACTCAGGCT ATCAATGCCG CTCAGGGACG TACCTTCATC
CTGTTTACCA GTCATCGTAT GATGAATGCC TGCGCAAGGG TGCTTCAAAG CAGGGTTGCC
TATCCCTTGT TAGTGCAGGG ACAGGGTAGC AAACAGAGTC TGCTAAAAAA GTTTCGTCAA
CTGGGTAATG GCGTGTTACT CGGAACCGGT GCATTCTGGG AAGGGGTCGA TGTGCGGGGT
AAACTCCTGA GCTGCGTGAT CATCGATAAA CTGCCTTTTG TGTCACCCGA TGATACGCTG
TATAAGGCCA GAGCCGACAG TATCTCCCGC GAGGGAAAAG ATCCTTTCTC GACGATCTCA
TTGCCCCAGG CGGTGATCTC ACTCAATCAA GGGGTAGGTC GATTGATACG TGACGAGAAA
GACAAAGGTG TATTGATACT CTGTGATAAC CGCATCGTTA ACCGTCCATA CGGTCAGGCC
TTCCTGAACT CACTGCCGCC CATGGCAAGA ACCCGGGACA TGGGCAAGGT GGTGAATTTC
TTGAAACAGA TAAAATAG
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| Protein sequence | MTSTTTSRLT KEIALAFGSD GMLARHIQGY SARDVQVQMA EAVCDAINNK SDLVVEAGTG
VGKTFAYLIP ALLSGKQVII STGSKNLQEQ LFYKDLPSLL SMLDISPKVA LLKGRNNYLC
QDLMEKQLNG CDSLDPKVLD DLLRINQWAG QTSDGDLGGL TSVSENADVL PLIASSREKC
TGKRCDHYEV CFTRKARSRA MDAKVIVVNH HLFFADRVLK ETGFAELLPD SDVVVFDEAH
LLSDIAVTYF GQQTSTRGLT ELLNSIIEIY RKELRDSPQI EALTSRCISQ LNDWHQQMFD
RDGSDWRQLM GDKDLAACSW GLLKELQSLE ALLQSHVGRS EDLDDGLEKL NGFTNKLALF
FQCENNQAAY SVEYGHRYLT LRIAPINVAR ECEKLFDAQT SWVFTSATLQ INRDLTLFTK
GLGIAKARQL ILDSPFDYPN NALLCVPRHL SKVSNQEAAV RELVDIATQA INAAQGRTFI
LFTSHRMMNA CARVLQSRVA YPLLVQGQGS KQSLLKKFRQ LGNGVLLGTG AFWEGVDVRG
KLLSCVIIDK LPFVSPDDTL YKARADSISR EGKDPFSTIS LPQAVISLNQ GVGRLIRDEK
DKGVLILCDN RIVNRPYGQA FLNSLPPMAR TRDMGKVVNF LKQIK
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