| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2523 |
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| Symbol | |
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| ID | 5609617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3066938 |
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| End bp | 3068611 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933442 |
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| Product | long-chain-fatty-acid--CoA ligase |
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| Protein accession | YP_001474258 |
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| Protein GI | 157375658 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00313327 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.944689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAACAGC TTTGGATAGA TAACTTACCT GATGATGTAC CATCGGAAAT TGATGTAAAC
CAGTATGATT CGCTTGTCGA TATGTTTGAG AAATCAGTAT CGAAGTATGC CGACCAACCT
GCGTTTGTAA ATATGGGCGC AACACTGACT TATCGTAAGT TGGAAGAGCG AAGCCGCGCA
TTTGCCGCCT ATCTTCAAAA TGAACTTAAG TTAGTCAAAG GCGACAGAGT CGCCATCATG
ATGCCTAACT TATTACAATA TCCTATCGCG CTGTTTGGCA TATTACGTGC CGGAATGGTT
GTGGTGAATG TAAACCCTCT CTATACCCCA AGAGAATTGA AGCACCAACT GAACGATTCC
GGTGCAAAAG CGATTGTTGT CGTCTCTAAT TTTGCCCATA CACTCGAGAA GGTCGTCGAT
CAGACTCCAG TCGAGAGCGT GATCCTGACC GGGCTTGGTG ATCTTCTTAG CGCGCCGAAA
CGCACATTAG TAAACTTTGT CGTCAAGTAC ATCAAGAAGA TGGTACCAAA ATACGACTTG
CCCCATGCCA TCTCGATGCG AAAGGCATTA TCGAAAGGCA GAGGTCTGCA ATACGTTAAA
CCTAAACTGG TTAGCGATGA TATCTCATTC CTGCAGTATA CCGGCGGGAC TACCGGTGTA
TCGAAAGGCG CCATGCTCAC ACACGGCAAT GTGGTGAGCA ACCTGTTACA GGCGGACGCT
GCATATTCGC CACTGTTGAT CGACGGTAAA GAGTTCGTAG TGACTGCACT GCCTTTGTAC
CATATCTTCG CATTAACCGT GAATTGCCTG TTGTTTATGC ATAAAGGCTC CAACAACCTA
CTTATCACTA ACCCAAGGGA TCTGCCAGCA TTCATCAGTG AGCTGAAAAA GCACCCTTAT
ACGGCAATTA CCGGAGTAAA TACCCTCTTT AATGCCTTGG TTAATACGCC GGAGTTTGCC
GAGTTAGACT TTTCTCAGGT CAAGTTATCC ATTGGTGGCG GTATGGCTGT ACAGCGTGCA
GTGGCCGATA AGTGGCAAAG AATCACTAAG AACAAACTAC TCGAAGGTTA CGGCCTGACA
GAGGCCGCTC CTCTGGTGAC CTGTTGTCCC TATAACCTTG AAGGTTATAA CGGTTCTATC
GGCTTTCCGG TTGCCATGAC TGATATTCAG GTGCGTGATG ACGCCGGTAA AGTCCTGCCT
CAGGGGGAGA ACGGTGAACT TTTTGCCAAG GGACCTCAGG TGATGAAAGG CTATTGGCAA
CGCCCGGAAG AGACGGCAAA CGTTATCGAT AGCCAAGGTT ATCTGGCAAC GGGCGATATT
GGCTATATGG ATGAAAATGG TTTCTTTTTC ATTGTCGACC GTAAGAAGGA TATGATCTTA
GTATCAGGTT TCAATGTCTT CCCTAATGAG GTGGAGGAGG TTGTGGCTAT GCATCCAAAA
GTGGTCGAAG TTGCCGCCGT TGGAGTGCCT AATGAGCTAT CCGGTGAAAC GGTGAAAGTG
TTCGTGGTGC AAAATGATAA ATCTTTAACC GAACAAGATG TCATCGCGCA TTGTCGTGAG
CATTTAACGG GATATAAAGT TCCTAAACTG GTAGAATTCA GAGACGAGCT ACCGAAATCG
AACGTAGGTA AAATTCTGCG TAGAGAGTTG AGGGATGAAG TTAAACCTAG TTAA
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| Protein sequence | MEQLWIDNLP DDVPSEIDVN QYDSLVDMFE KSVSKYADQP AFVNMGATLT YRKLEERSRA
FAAYLQNELK LVKGDRVAIM MPNLLQYPIA LFGILRAGMV VVNVNPLYTP RELKHQLNDS
GAKAIVVVSN FAHTLEKVVD QTPVESVILT GLGDLLSAPK RTLVNFVVKY IKKMVPKYDL
PHAISMRKAL SKGRGLQYVK PKLVSDDISF LQYTGGTTGV SKGAMLTHGN VVSNLLQADA
AYSPLLIDGK EFVVTALPLY HIFALTVNCL LFMHKGSNNL LITNPRDLPA FISELKKHPY
TAITGVNTLF NALVNTPEFA ELDFSQVKLS IGGGMAVQRA VADKWQRITK NKLLEGYGLT
EAAPLVTCCP YNLEGYNGSI GFPVAMTDIQ VRDDAGKVLP QGENGELFAK GPQVMKGYWQ
RPEETANVID SQGYLATGDI GYMDENGFFF IVDRKKDMIL VSGFNVFPNE VEEVVAMHPK
VVEVAAVGVP NELSGETVKV FVVQNDKSLT EQDVIAHCRE HLTGYKVPKL VEFRDELPKS
NVGKILRREL RDEVKPS
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