| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2518 |
|---|
| Symbol | |
|---|
| ID | 5610981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3063206 |
|---|
| End bp | 3063487 |
|---|
| Gene Length | 282 bp |
|---|
| Protein Length | 93 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640933437 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474253 |
|---|
| Protein GI | 157375653 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3100] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000104865 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCTGTG CTGTATATAA GAGTCGACGT AAGGTCGACA GCTACCTTTT CGTTGAAAAA
CGCAATGTTT TTGAGCGGGT ACCCGATGCA TTGATGAAGA TGTTTGGCGA GCCTGATTTA
GTGATGATGT TACCCCTGAT GAAGCGTGAT CATTTAGGCT TCGCAGATAT CAACAAAGTC
AAAAGTGAAC TTGCTGAAAA AGGTTATTAC TTGCAACTTC CCCCACCTAA AGTTAATTTA
CTCGAACAGC ATAAGCTGGA GATTGGCTAC AGCCGAGATT AG
|
|---|
| Protein sequence | MICAVYKSRR KVDSYLFVEK RNVFERVPDA LMKMFGEPDL VMMLPLMKRD HLGFADINKV
KSELAEKGYY LQLPPPKVNL LEQHKLEIGY SRD
|
|---|
| |