| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2513 |
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| Symbol | nhaB |
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| ID | 5610058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3058238 |
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| End bp | 3059821 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933432 |
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| Product | sodium/proton antiporter |
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| Protein accession | YP_001474248 |
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| Protein GI | 157375648 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3067] Na+/H+ antiporter |
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| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000214926 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGTGA CTATGAGTCA GGCGTTTATT GATAACTTCT TGGGAAATTC TCCTAAGTGG
TTCAAAATCG CGATTTTATC TTTTTTAATT ATTAACCCAA TTATTTTTTA CCTTAATCCG
TTTATTGCGG GTTGGTTACT GGTTGTTGAG TTCATTTTCA CCTTGGCCAT GGCACTGAAA
TGCTACCCAC TTCAGCCCGG TGGTCTGTTA GCCATCGAAG CCGTCGCCAT CGGCATGACC
TCCCCAAGCC AGGTCTTTCA TGAGTTAGAA GCCAACCTTG AAGTTTTATT GCTGTTGATC
TTCATGGTTG CCGGCATCTA TTTCATGAAG CAACTACTGC TGTTTGTCTT CACCAAGATG
ATCACTAAGG TACGCTCAAA AATTGTTGTA TCTTTAATGT TCTGTGTTGC TTCCGCCTTC
CTCTCTGCTT TTCTCGACGC CCTGACGGTT ATTGCCGTTA TCATTGCCGT CGCAGTTGGC
TTCTACTCTA TCTACCACAA GGTGGCTTCG GGTAAGAGCT TCGCCGATGA TCATGACCAT
ACTTCCGATG GACACCATCA GCTGTGTCAA GATGAATTAA GCGCATTCCG TGGTTTCCTT
CGTAACCTGT TGATGCACGC CGGTATAGGT ACAGCCCTCG GCGGTGTATG TACTATGGTG
GGTGAACCGC AAAACTTAAT TATTGCGGCT CAGGCTAACT GGCAGTTTGT CGAATTTGCG
ATGCGTATGT CACCCGTAAC CGTTCCAGTC TTCTTTGCCG GTATTATCAC CTGTTTCTTA
GTCGAAAAGT TTAAGGTGTT TGGTTACGGT CAACAGTTAC CGGAAGCGGT ACATACCATC
TTGTCTGAAT TTGCTGCTCA TGAAGACGCT CATCGAACTA AACATGACAA GGTAAAGCTG
GGTATTCAGG CTCTTATTGG TCTCTGGCTG GTCGTTGGAC TCGCTTTCCA TCTGGCCTCA
GTTGGCTTAA TTGGACTGTC GGTTATCATT ATGGCAACGG CATTTAACGG AATAACGAAC
GAGCATGCCA TAGGTAAAGC CTTCGAAGAG GCACTTCCTT TTACCGCACT GTTGGCCGTA
TTCTTTGCCA TCGTCGCAGT CATTATCGAC CAACAGCTGT TTGCTCCGGT TATTCAATGG
GCACTCAGCT ACGAAGGCAA CACACAGCTG GTTATCTTCT ATATCGCCAA TGGCCTGCTG
TCTATGGTCA GTGATAACGT CTTTGTCGGT ACGGTTTACA TCAACGAAGT TAAAGCCGCT
CTGTTATCGG GCCAGATCAC CCGTGATCAG TTCGACCTTC TTGCTGTAGC AATCAACACA
GGTACTAACC TGCCATCGGT TGCCACACCA AACGGGCAAG CCGCATTCCT GTTCTTGCTA
ACGTCTGCAA TTGCGCCCCT CATTCGTCTC TCCTATGGAC GCATGGTGTG GATGGCACTG
CCGTACACCA TAGTTCTGTC GATTGTCGGC GTCTTAGCCA TTCATTTGGG CGCACTGGAA
CAGATGACAC AATACTTCTA TGACACGCAG ATGCTATTGC ATCATAGCGT CAAGGATGCT
GCCGGTGCGG TCAGCGGACA TTAA
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| Protein sequence | MPVTMSQAFI DNFLGNSPKW FKIAILSFLI INPIIFYLNP FIAGWLLVVE FIFTLAMALK
CYPLQPGGLL AIEAVAIGMT SPSQVFHELE ANLEVLLLLI FMVAGIYFMK QLLLFVFTKM
ITKVRSKIVV SLMFCVASAF LSAFLDALTV IAVIIAVAVG FYSIYHKVAS GKSFADDHDH
TSDGHHQLCQ DELSAFRGFL RNLLMHAGIG TALGGVCTMV GEPQNLIIAA QANWQFVEFA
MRMSPVTVPV FFAGIITCFL VEKFKVFGYG QQLPEAVHTI LSEFAAHEDA HRTKHDKVKL
GIQALIGLWL VVGLAFHLAS VGLIGLSVII MATAFNGITN EHAIGKAFEE ALPFTALLAV
FFAIVAVIID QQLFAPVIQW ALSYEGNTQL VIFYIANGLL SMVSDNVFVG TVYINEVKAA
LLSGQITRDQ FDLLAVAINT GTNLPSVATP NGQAAFLFLL TSAIAPLIRL SYGRMVWMAL
PYTIVLSIVG VLAIHLGALE QMTQYFYDTQ MLLHHSVKDA AGAVSGH
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