| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2511 |
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| Symbol | |
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| ID | 5611081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3053146 |
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| End bp | 3057105 |
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| Gene Length | 3960 bp |
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| Protein Length | 1319 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933430 |
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| Product | hypothetical protein |
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| Protein accession | YP_001474246 |
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| Protein GI | 157375646 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2911] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0732118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.936586 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGC CCACTAGAGA GACTGGTATT AACCAGGCTG AAACTCCGTC AGATAGTACT
GATGCCGCCC CAAAAAATAG CCTTGCACGG ACACTATGGA AAAGTTTTAA GGCCGTCTCC
AGGACGATTA TCTATCTGCC TCTGGGCATG CTGATCATCC TTGCAATACT TTTAGGCACC
CCCTTAGGTA GCAGACTCGC GGTGGCCCTT GCCGATATTT TCGTGCCCGA TCTCGATATC
ACCTACGTCT CAGGCACGTT AAACAAACGC CTCGAAACGA CCGATGTCCA CTGGAGTATG
GAGGGTATCG CGGTCGATGT TGACGACCTT ATATTAGATT GGCGCCCCAT GTGCCTGCTG
AGCAAACAGT TATGTGTCAA CGAACTCGCA GCAAGTAAGG TGTTGGTGTC GATAGATACA
GACAAGCTCG GAGATCAAAA CCTGGTTGAT GAAGAGCTAA CAGGACTTAA GGGCGCCACC
GAAGTTGATA GCGGCAAACA AGGCTTTCCG GACAATCAGC TTAATGACTC TCAGCTCAAG
GACTATCCGT CAAATCAAAA CCAAGAGATA CAACTGCCTT TCGGTATCGA TCTCAAGCGG
GCAGATTTAG CCAACGTAAA GGTGCGCGTC AACGATATGC AGTTCAATGC CTCACGTCTA
CAAACACAGG CACAATGGCA ACAGACCGGC ATCAGAGCCA AGTATCTGCA CAGTAATGAT
CTGCTGGTAT CGATTCCATT ATCTTCTGCA GACAAGAACG CTGAAATAAT TGAAAAGGCA
AACCAAACGA CTCAAGACGA AGACACCAGC TGGACCATGG CACACCTGCC CGCCGTCTTT
ATGCCGATAC CGGTGTTTGT TACCGATGCC GTCCTGGAGA AGAGTCACCT GAAACTCGGT
AAGCGCGATG ACTATTTCGA CAACATCGTA CTCGACGGTA GTTACCATAG CTTTCTGGTG
AACCTCAATC AGCTGCATGT TGAACATACC TATGGCAAGG TTGATCTCAA GGGGGGGATC
ACACTCAAAG ATGACTACCC TATGGATATC TCAGCCACTG TCGATGCACG CAGTGTAGCC
GAACTGCCCG GACTTAAGCT GCAACAGCTT TCGGTCCACG TATCTCAGGG CTTTAAAAAA
CTAGCCGTGA CGGCGACTGG TAAGGGTCAT ATCGACTTTA ACCTGCAAGG TGATATCGGC
CTGGCAAAGA GAAGCCTCCC CTATGAGCTT AAATTTGAGA GTAAGGCCAT AGGTTGGCCA
CTCGATGCAC CAAATTACTC GGGTAAATCG ATAAGTCTTA TCACCCATGG GGATCTCAAT
AGTCAGGATG TCATCCTCTC GGGCAACATC AAGACCCCTT TTCATCCCGT GTTGGCTGTC
GATACCCAAT TTAAACATAC AGGTAAACAA CTGGATGTAG ATCATCTGCG AGTGGAAGGA
GAGTTGGGAG AAGCTGAGCT GTCAGGCAGC GCACAGTATG AAGATGGGGT AAGCTGGGAC
GCCGACATCA ACACTGTCGA CTTCAAGATG CAACAGCTAA AACTAAACCT TGAAACGCCT
CTGCCCGATA GCATCATCAG TGGCCAATTT CACACCAAGG GCCAGGTTGA CTCTAAACGC
TGGGAGGTCG GCATTGACAA CTCAGATCTG GAGGGCGAAA TTCAGGGCTA CCCATTTCAC
CTCCTCGGGG ATATCAATAT CGATGATAAA CTGCACCTCA AAGCCGATAG TTTAAAGCTC
AGCGCGCTGC AGAGTGTATT GTCCATATCC GGCAATGCTG ATGAGGCTTG GGCCGTTAAC
GCAAAATTGC AGATCCCGGA TCTTAGCCTC TGGCATACCG AGTCATCGGG CAGTATCGAT
GCATTTATCA ATGTCTCGGG TGAAAGCGAG CACCCACAAG TTTCCGTTTC AGCCGAGTTA
TTCGAGCTGC AATTTCAACA ACACAAAATT GAACAAGCCC TGGCCAAAGG CTTTTATCGA
CCCAAAGATA ATCAGGAGTT TGCCCTCTCT GTTAAGGCTA AGGAACTGAA GCTCGCAACC
GTCAAGCTTG ATTCGGTTAC CCTGGGTTTT AAAGGTAATG ACACAAAGCA GAAACTGGGG
CTGCAAACGT TCGGTGAGCT ACAACTCAAT ACCAAAATTT ACTCCCGATA CGACACAAAA
ACGACTCAAT TAGAGGCCGA GATCAGAAAC TTGAGTTTGA ACTCTGTGCT GGGTAAGTGG
GCGCTCCAGG CACCTATCGA TGTCAGCTGG AATAATGACA AGCAAACGGG CTTAGTTAAC
ACTTTTTGCT GGCTCAACGA AAACGGTAAA CTTTGCCTCG ATGATCCGGC AGAGCTCAGC
AAAAACGGTG AGGCCAGTAT CCTGTTCGAT GGCGATATAG GTGGAGTATT GACGCCATTA
CTGCCGGAAA ATTTGACGTG GCAGGCCCCC GCTAACTTAA CCTCTAATAT CAAGTGGCAA
GAAGAGTCGA AACCCGAAGG CTACTTAGAA CTGAATTTAG CCCCGGGTCA GGTGAGTTTC
AACAATAATA ACCGTGTTAT CGATGTCGGC TACAGGATGC TTAATTTTCA AGCTAGCCTG
GACAAAGATA AGCTTGCCAC CCAACTTAAA TTTGATTCAC ACGATATCGC CAGTTGGGAA
GGACAGTTAG AGGTAAGCGT CTCCCCTGAC AGGGCGATAT CCGGTTACAC TAAGCTAGAT
CAAATAAACC TCGATGCCCT ATCGGAGCTT ATGCCACAAC TCGAAACTCT GACCGGAAAA
ATTTCCAGTG AGCTGGAGAT ATCCGGCACA CTCGCCAAAC CGGATATTTC CGGAAAAGTG
CAGCTGGAAA ATGGTCACCT GCTGGCCGCC GCCAACCCGA CTCCATTGGA GAATATCGAA
CTCGATCTCT TACTCTCGGG CCAGAAAGCC ACACTCGATG GGCGGTGGAA AATGGGAGAG
GGCGAGGCAA AAGTTACTGG TTTGTTTGAT TGGAGAGGCG ATAGCTTCAA CGGTGATATT
CAGTTCGATG GTGATAAGCT TGCTATTATC CAACCACCGC TTGCCATCAT CACGGCCTCC
CCTGCACTTA AAATCAAATT CGATAAAGAT AGGGCCGACA TTCAAGGCTC TATAGATATC
GATTCGGGTA ATATTAAGAT TAGTCAACTG CCAGAAGGCG GTGTCGCCGT CTCCGATGAT
GTGGTATTTG AAGACAGCAT CTCCAGCGGA CAAGTCGAAC AAAGCCCCTA TGCCATCACA
ACCAACATTA AAATCAAGGT TGCGGATAGA CTTAGAATCG ATGGCATGGG GTTAAGAGGA
AAGCTAACGG GGACGCTCGA TCTCAGACAG GAAGCCTTTC GCCCTCCTCT GCTGTACGGC
GATATAAGAG TCATCGACGG TAGCTATAAA TTTATGGGGC AAACCCTTAA AATCAATGCC
GGAGAGGTGC AATTTATCGG CCCGGTCGAG ATCCCTAACC TTAATATTGA GGCGGTTAGA
GAGATTAAAG ATGAAGATGT CGTTGCCGGG ATCAGGATCA CCGGCACTCC ACTCAAACCC
ATAGTGACGC TTTTTTCATC ACCAGTGAAA GAGCAAGCCG AGATCCTCTC CTATATCATC
AAAGGAACCG GGTTTCACAG TAACGACGGC GATCAAAATA GTAGCTTGAT GATGGGGGCG
GCATTAACAC TCAGTAATCA ACTCGGCGGT GGCACGGTAA ATCTGATCGG CGAATCCGCC
ACAGGTCTCA TCGAAAAAGT GGGCTTCTCT AATGTACAAC TCGATGCTAA TGATGATGGC
CGAGTCGCCA TCAGTGGCTA CATCGGTGAA AACCTTATGG TTAAATACGG TGTCGGTGTA
TTTAACCCGG GCTATGAGAT GACCGTAAGG TATTACCTGT TATCTCAACT CTATCTGGAA
ACCGTGTCTG GCACGGTCGA ACAGTCCCTG GATATCTACT ACAACTTCAA CATAGACTAG
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| Protein sequence | MTQPTRETGI NQAETPSDST DAAPKNSLAR TLWKSFKAVS RTIIYLPLGM LIILAILLGT
PLGSRLAVAL ADIFVPDLDI TYVSGTLNKR LETTDVHWSM EGIAVDVDDL ILDWRPMCLL
SKQLCVNELA ASKVLVSIDT DKLGDQNLVD EELTGLKGAT EVDSGKQGFP DNQLNDSQLK
DYPSNQNQEI QLPFGIDLKR ADLANVKVRV NDMQFNASRL QTQAQWQQTG IRAKYLHSND
LLVSIPLSSA DKNAEIIEKA NQTTQDEDTS WTMAHLPAVF MPIPVFVTDA VLEKSHLKLG
KRDDYFDNIV LDGSYHSFLV NLNQLHVEHT YGKVDLKGGI TLKDDYPMDI SATVDARSVA
ELPGLKLQQL SVHVSQGFKK LAVTATGKGH IDFNLQGDIG LAKRSLPYEL KFESKAIGWP
LDAPNYSGKS ISLITHGDLN SQDVILSGNI KTPFHPVLAV DTQFKHTGKQ LDVDHLRVEG
ELGEAELSGS AQYEDGVSWD ADINTVDFKM QQLKLNLETP LPDSIISGQF HTKGQVDSKR
WEVGIDNSDL EGEIQGYPFH LLGDINIDDK LHLKADSLKL SALQSVLSIS GNADEAWAVN
AKLQIPDLSL WHTESSGSID AFINVSGESE HPQVSVSAEL FELQFQQHKI EQALAKGFYR
PKDNQEFALS VKAKELKLAT VKLDSVTLGF KGNDTKQKLG LQTFGELQLN TKIYSRYDTK
TTQLEAEIRN LSLNSVLGKW ALQAPIDVSW NNDKQTGLVN TFCWLNENGK LCLDDPAELS
KNGEASILFD GDIGGVLTPL LPENLTWQAP ANLTSNIKWQ EESKPEGYLE LNLAPGQVSF
NNNNRVIDVG YRMLNFQASL DKDKLATQLK FDSHDIASWE GQLEVSVSPD RAISGYTKLD
QINLDALSEL MPQLETLTGK ISSELEISGT LAKPDISGKV QLENGHLLAA ANPTPLENIE
LDLLLSGQKA TLDGRWKMGE GEAKVTGLFD WRGDSFNGDI QFDGDKLAII QPPLAIITAS
PALKIKFDKD RADIQGSIDI DSGNIKISQL PEGGVAVSDD VVFEDSISSG QVEQSPYAIT
TNIKIKVADR LRIDGMGLRG KLTGTLDLRQ EAFRPPLLYG DIRVIDGSYK FMGQTLKINA
GEVQFIGPVE IPNLNIEAVR EIKDEDVVAG IRITGTPLKP IVTLFSSPVK EQAEILSYII
KGTGFHSNDG DQNSSLMMGA ALTLSNQLGG GTVNLIGESA TGLIEKVGFS NVQLDANDDG
RVAISGYIGE NLMVKYGVGV FNPGYEMTVR YYLLSQLYLE TVSGTVEQSL DIYYNFNID
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